Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00172 ATGACtaaacttatctttattttggGCACCCTCATTGGATTATGTTGTTTCACATTAAATTCCTATGCTTTCCAACCTTCAGGATGGATCAAAGGCCATGCCACATTTTATGGTGGCAGTGATGCCTCAGGCACCATGGGAGGAGCTTGTGGTTATGGAAATCTATATTCAACAGGATATGGGACAAGAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGAGCTTCTTGTGGGGAGTGTTACAAAATCATTTGTGATTATAAGACAGACCCAAGATGGTGCATAAAAGGAAGATCTATTACTATTACAGCCACAAATTTCTGCCCTCCTAATTTCGATCTTCCTAGCAATGATGGAGGATGGTGCAATCCACCTCTCAAGCATTTTGATATGGCTCAACCAGCTTGGGAAAAAATTGGAATCTACAGAGGAGGGATCGTCCCTGTCTTATTCCAAAGGGTACCTTGCAAAAAGCATGGAGGAGTTAGGTTCACCGTAAATGGGAGGGACTATTTTGAGCTAGTGTTGATCAGCAATCTAGGTGGTGCTGGATCAATCCAATCTGTATCCATTCAAGGCTCCAAAACAGGTTGGATGGCTATGTCAAGAAATTGGGGTGCTAATTGGCAATCAAATGCTTATTTGAATGGTCAATCTTTGTCCTTCAAAGTCACAACCACTGATGGTGTAACAAGAACTTTCCAAAATATTGTTCCTTCCAATTGGGCATTTGGCCAATCTTTCTCTAGCCGGCTCCAGTTCTAA 768 0.4115 MTKLIFILGTLIGLCCFTLNSYAFQPSGWIKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPSNDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTVNGRDYFELVLISNLGGAGSIQSVSIQGSKTGWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGVTRTFQNIVPSNWAFGQSFSSRLQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Tsu01g00172 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Tsu01g00172 255 PANTHER EXPANSIN 3 255 - -
Tsu01g00172 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Tsu01g00172 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Tsu01g00172 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Tsu01g00172 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Tsu01g00172 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Tsu01g00172 255 PANTHER EXPANSIN-A15 3 255 IPR002963 GO:0009664
Tsu01g00172 255 Gene3D - 162 255 IPR036749 -
Tsu01g00172 255 SMART dpbb_1 64 152 IPR007112 -
Tsu01g00172 255 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Tsu01g00172 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Tsu01g00172 255 Gene3D - 15 158 IPR036908 -
Tsu01g00172 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00172 Tsu-Chr1 1334153 1336164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00172 1 255 Expansin Gene Family AT4G01630 63.281 9.31e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00172 - - lang:109341531 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00172 01 1334153 1336164 Tsu01g00172 01 1334153 1336164 ECH