Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00171 ATGACTCAAGATGAAGAGATGAAAGATCACCCAACTCCTTCCCACTCAATTACTCCACCTATTCAATCTACACTGCAAAATTTGAAGGAAATAGCATCAATCATTGAAACTGGTTCAGACTCTAAGGAGGTTCGCAGAATTTCTCGTGCTGTGCGCCTTACAATGGCGTTGAGGCCTAAGCTCACAGCTCCACTCCTCTCATCTTTCATCGATCATGTTCTTCCTTCAGCTTCTGACTCTCATACTAGGTTATCTTCTTATATTCCCAAGGATGATGATCATGAGATGGAAGTGGACACTGCAACATCTGCAGCCATTCAAACCCCAGCCAAGCACTTGTTGCCTGAGCTAGAAATTTTCTGTTACTTTCTTGtgcttctttttcttattgATCAGAAACGATACAATGAGGCCAAAGCTTGCTCCTCAGCTAGTATTGATAGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATTGCTTCAAGACTGTACTTTTATTACTCGTATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGCAACCTCTTTCAGTTGCACCGGATTGCTACCCTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCCAAGGCTCCGCGATTTGAGGCACATTCAAACCAGCAGTTCTGCCGCTATCTCTTCTACCTTGGAAAAATTCGAACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTCCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGTTTTCGGATTCAGTGTAACAAGTGGGCCATTATAGTGCGTTTACTGTTGGGAGAAATTCCTGAGAGAACTGTCTTTGTGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACCAATGCTGTTAGGATTGGTGATTTAGAGCTGTTTAGGAATGTTGCAGAGAAGTATGCCACCACTTTCAGTACAGATGGGACCAATAATTTGATCGTTCGATTGCGTCATAATGTGATCAGAACCGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCGCTGGCTGATGTAGCTCAGAAGCTGAGATTGAGCTCTGCGGATCCCATTGCTGATGCTGAAAGCATTATTTCAAAGGCTATCCGTGATGGGGCAATTGATGCAACATTGGATCATGCTAATAAATGGATGTTGTCCAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGATTTCCAAAAAATACACACAAGGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAACAAGAGCAAGAACTGGCGAAGCatattgaagaagaagatgatgatgatgacttCTGA 1470 0.4211 MTQDEEMKDHPTPSHSITPPIQSTLQNLKEIASIIETGSDSKEVRRISRAVRLTMALRPKLTAPLLSSFIDHVLPSASDSHTRLSSYIPKDDDHEMEVDTATSAAIQTPAKHLLPELEIFCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTVFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFSTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANKWMLSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00171 489 ProSiteProfiles PCI domain profile. 240 421 IPR000717 -
Tsu01g00171 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Tsu01g00171 489 SUPERFAMILY "Winged helix" DNA-binding domain 349 421 IPR036390 -
Tsu01g00171 489 MobiDBLite consensus disorder prediction 454 478 - -
Tsu01g00171 489 Coils Coil 455 483 - -
Tsu01g00171 489 SMART PINT_4 346 439 IPR000717 -
Tsu01g00171 489 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 346 439 - -
Tsu01g00171 489 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Tsu01g00171 489 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g00171 489 Pfam PCI domain 312 416 IPR000717 -
Tsu01g00171 489 Gene3D - 244 450 - -
Tsu01g00171 489 Pfam Proteasome regulatory subunit C-terminal 421 487 IPR013586 GO:0000502|GO:0030234|GO:0042176
Tsu01g00171 489 MobiDBLite consensus disorder prediction 454 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00171 Tsu-Chr1 1327621 1333109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00171 K03033 - gmx:100814379 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00171 01 1327621 1333109 Tsu01g00171 01 1327621 1333109 ECH
Tsu01g00171 01 1327621 1333109 Tsu07g00238 07 1789004 1793708 PCT