Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00168 ATGGGACACTGCTTCACCAAACCACACGACAACAGAGTACCTATCTCTTATGACTATGGTAATTCACAACCCCCACAAAGAAATCAACCTCGCCAAACTCGATATCCATACCATAACACTGCTGCAAAATCAGAGCCATCTCCATATTCTTCTGCTTCATCATCGAACGCGAATGCGAATAGTAGTCTTCAACCAATATTAGGAAGACCATACATTGACATAAAGGCACTTTATAGTATTGGAAAAGAACTAGGGAGGGGTCAATTTGGTGTCACTTATCTTTGCACCGAAAAGGCGACCGGAAGAAACTATGCTTGTAAGTCCATTTCAAGACGAAAGCTAACAAGAAAGAAGGAAATTGAGGATGTTAAGAGAGAAATTATGATCCTTCAGCACTTAACTGGACAACCAAACATAGTTGAGTTCAAGTGTGCTTATGAGGATAGAGAAAATGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTTTTTGATCGGATCACTGCAAAGGGTAGTTACTCTGAGCGTGAAGCTGCTTCTATATTCAAACAAATTATGAATGTGGTTCATGCTTGTCATTTTATGGGGGTTATGCATAGGGACCTTAAGCCTGAGAATTTCTTGCTTGTTAATAAGGATCTTAAGGCACCTTTGAAAGCTACTGATTTTGGATCTTCTGTTTTCATTGAAGAAGGTAAAGTATATAAAGAGCTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAACGGAATTATGGAAAGGAGATTGATGTCTGGAGTGCTGGAGTTATTTTATATATCCTCTTATGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAAGGCATATTTCAAGCTATTTTGGATGGTAAGCTCGATCTGGAGAGTGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGCTGTGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCACTTGAACACCCATGGATGAAGGAAGGTGGTGAGGCATCAGACAAGCCTTTAGATAATGCTGTTTTAATTCGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGgTAATAGCAGAAAACCTTTCAGATGAGGAAATCAAGGGACTGAAACAAATGTTCAACAATATTGATACTGATCGAAGTGGCACAATCACATATGAAGAACTCAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAATGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGACGTTGACAAGAACGGAACTATTGACTATCATGAATTCATTACTGCCACTATTAATCGGCATAAACTTGAGAGGGAAGAGAATTTGTTCAAGGCATTTCAATACTTTGACAAGGATAACAGCGGTTATGTAACAAGAGAAGAACTTAGACAAGCTTTGGCTGAATATCAAATGGGAGATGAAGCAACTATAGATGAAGTCATTAATGATGTTGACACTGACAATGATGGGAGAATTAATTACCAAGAGTTTGTAGCTATGATGAAAAAGGGGACCTTGGATAATGATGAGAAAGAGAAACCACAAtaa 1590 0.3918 MGHCFTKPHDNRVPISYDYGNSQPPQRNQPRQTRYPYHNTAAKSEPSPYSSASSSNANANSSLQPILGRPYIDIKALYSIGKELGRGQFGVTYLCTEKATGRNYACKSISRRKLTRKKEIEDVKREIMILQHLTGQPNIVEFKCAYEDRENVHLVMELCLGGELFDRITAKGSYSEREAASIFKQIMNVVHACHFMGVMHRDLKPENFLLVNKDLKAPLKATDFGSSVFIEEGKVYKELVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLCGVPPFWAETEKGIFQAILDGKLDLESAPWPSISAAAKDLIRKMLCYDPKKRITASDALEHPWMKEGGEASDKPLDNAVLIRMKQFRAMNKMKKLALKVIAENLSDEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLNESEIKQLMDAADVDKNGTIDYHEFITATINRHKLEREENLFKAFQYFDKDNSGYVTREELRQALAEYQMGDEATIDEVINDVDTDNDGRINYQEFVAMMKKGTLDNDEKEKPQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00168 529 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00168 529 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Tsu01g00168 529 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Tsu01g00168 529 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Tsu01g00168 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Tsu01g00168 529 CDD STKc_CAMK 78 335 - -
Tsu01g00168 529 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Tsu01g00168 529 Pfam EF-hand domain pair 453 516 IPR002048 GO:0005509
Tsu01g00168 529 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Tsu01g00168 529 SMART efh_1 490 518 IPR002048 GO:0005509
Tsu01g00168 529 SMART efh_1 419 447 IPR002048 GO:0005509
Tsu01g00168 529 SMART efh_1 455 483 IPR002048 GO:0005509
Tsu01g00168 529 SMART efh_1 383 411 IPR002048 GO:0005509
Tsu01g00168 529 MobiDBLite consensus disorder prediction 16 61 - -
Tsu01g00168 529 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Tsu01g00168 529 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 39 522 - -
Tsu01g00168 529 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Tsu01g00168 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 522 - -
Tsu01g00168 529 SUPERFAMILY Protein kinase-like (PK-like) 78 343 IPR011009 -
Tsu01g00168 529 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Tsu01g00168 529 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00168 529 MobiDBLite consensus disorder prediction 1 61 - -
Tsu01g00168 529 ProSiteProfiles EF-hand calcium-binding domain profile. 487 521 IPR002048 GO:0005509
Tsu01g00168 529 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Tsu01g00168 529 Gene3D - 344 522 - -
Tsu01g00168 529 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Tsu01g00168 529 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Tsu01g00168 529 SUPERFAMILY EF-hand 375 516 IPR011992 -
Tsu01g00168 529 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00168 Tsu-Chr1 1310232 1314247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00168 1 529 EF-hand Containing Proteins AT3G20410 64.945 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g00168 Pkinase 2.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00168 K13412 - gmx:100816157 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00168 01 1310232 1314247 Tsu01g00168 01 1310232 1314247 ECH