Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00160 ATGGGTAACTCCACCAGTGTATGTGAAGCTGATCTAACGCAAACCACCACCAATCAACCAAATGATCCTGGGCCACCTCCACTTTTGCGAGATGGAAAGGAAATACTTTTTCAGGCATTCAACTGGGAGTCTCACAAATTCAATTGGTGGCAAAATTTAGAAACCAAACTGCCTGACATAGCTAAGTCTGGAATCACTTCTGCATGGTTGCCACCCCCAACTCATTCCTTCTCCCCTCAAGGCTATACTCCTCAGAACCTTTACTCTCTTAATACTAAATATGGTTCTGAGCATCAATTAAAAGCTTTACTTCATAAGATGAAGCAACACAAAGTCAGACCAATGGCTGACATAGTTATCAATCATCGTGTTGGCACCACCCAAGGACATGGAGGGATGTATAATCGTTTTGATGGAATTCCATTATCCTGGGATGAACGTGCTGTAACATCATCTACTGGTGGACTGGGTAATCGAAACACTGGGGCCATTTTCAAGGGGTTTCCCAATATCGACCATACTCAAGATTTTGTCAGAAAGGATATCACAGCATGGCTTCAGTGGCTACGCCATAAAGTAGGCTTTCAGGATTTTCGTTTTGATTATGCAAAAGGCTATTCTCCAAAATATGTGAAAGAATATATTGAAGGAGCAAAACCATTGTTCTCTGTTGGGGAGTATTGGGATACTTGCAACTACAAAGGTTCCAGCTTGGACTATAACCAAGATAGTCATAGGCAACGAATAATCGATTGGATTGATGGCACCGGACAGCTTTCAACTGCATTTGACTTCACAACAAAGGGAATTCTCCAGGAAGCTGTCAAGAGAGAATTTTGGCGTCTGCGTGATGCTGAAGGGAAGCCACCTGGTGTGATTGGGTGGTGGCCTTCAAGATCAGTTACATTTGTAGACAATCACGATACTGGCTCAACTCAGGCTCATTGGCCCTTCCCCTCTGATCATGTTATGGAGGGGTATGCATATATATTGACTCATCCTGGGACACCAACAATTTTCTATGACCACTTTTATGACTGGAGCAACTCATTTCATGAACAGATTGTGAAGTTGATTGACACTCGCAAGCGTCAAGGTATTCACAGCAGATCACCAATTAGGATCCTGGAGGCCAAGCACAATGTTTACTCTGCAATCATCGGGGAGAAGCTCTGCATGAAGATTGGAGATGGTTCATGGAGCCCATCTGGGAGGGAATGGACACTATCAACCAGCGGCCATAACTATGCTGTATGGCACAAGTAG 1266 0.4384 MGNSTSVCEADLTQTTTNQPNDPGPPPLLRDGKEILFQAFNWESHKFNWWQNLETKLPDIAKSGITSAWLPPPTHSFSPQGYTPQNLYSLNTKYGSEHQLKALLHKMKQHKVRPMADIVINHRVGTTQGHGGMYNRFDGIPLSWDERAVTSSTGGLGNRNTGAIFKGFPNIDHTQDFVRKDITAWLQWLRHKVGFQDFRFDYAKGYSPKYVKEYIEGAKPLFSVGEYWDTCNYKGSSLDYNQDSHRQRIIDWIDGTGQLSTAFDFTTKGILQEAVKREFWRLRDAEGKPPGVIGWWPSRSVTFVDNHDTGSTQAHWPFPSDHVMEGYAYILTHPGTPTIFYDHFYDWSNSFHEQIVKLIDTRKRQGIHSRSPIRILEAKHNVYSAIIGEKLCMKIGDGSWSPSGREWTLSTSGHNYAVWHK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00160 421 CDD AmyAc_arch_bac_plant_AmyA 35 373 - -
Tsu01g00160 421 Pfam Alpha-amylase C-terminal beta-sheet domain 364 420 IPR012850 GO:0004556|GO:0005509|GO:0005975
Tsu01g00160 421 Gene3D - 367 421 IPR013780 -
Tsu01g00160 421 SUPERFAMILY (Trans)glycosidases 42 352 IPR017853 -
Tsu01g00160 421 PANTHER ALPHA-AMYLASE 29 421 - -
Tsu01g00160 421 SMART alpha-amyl_c2 363 421 IPR012850 GO:0004556|GO:0005509|GO:0005975
Tsu01g00160 421 SUPERFAMILY Glycosyl hydrolase domain 367 421 - -
Tsu01g00160 421 MobiDBLite consensus disorder prediction 1 19 - -
Tsu01g00160 421 Gene3D Glycosidases 34 366 - -
Tsu01g00160 421 SMART aamy 34 374 IPR006047 GO:0005975
Tsu01g00160 421 PANTHER ALPHA-AMYLASE 2-RELATED 29 421 - -
Tsu01g00160 421 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g00160 421 Pfam Alpha amylase, catalytic domain 53 123 IPR006047 GO:0005975
Tsu01g00160 421 PRINTS Alpha-amylase signature 111 122 IPR006046 GO:0004556|GO:0005975|GO:0043169
Tsu01g00160 421 PRINTS Alpha-amylase signature 195 206 IPR006046 GO:0004556|GO:0005975|GO:0043169
Tsu01g00160 421 PRINTS Alpha-amylase signature 298 310 IPR006046 GO:0004556|GO:0005975|GO:0043169
Tsu01g00160 421 PIRSF Alpha-amylase_plant 27 421 IPR013775 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00160 Tsu-Chr1 1259881 1263233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00160 28 421 Glycoside Hydrolase AT1G76130 75.888 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00160 K01176 - gmx:100813490 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00160 01 1259881 1263233 Tsu01g00160 01 1259881 1263233 ECH