Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00156 ATGGCGTAtcaatcttcatcttcaaatgAAGGCGGCCCCAGTAACCTCAATGTTTCACCAGACTCTTCAGATTCAACTGTTCACCTCAATATCAAGACTCTTGATTCCCGAATCTACACTTTTCAAGTTCACAAAAATATGCCTGTTTCGCTGTTCAAAGAGAAAATTGCAAATGAAATAGGTGTTCCAGTTAGTCAGCAACGACTAATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAGTCAGTCACAGACTCCTGGTACAGCCTCTGGTGAGACAACCAGCACAACCGGTAACCGAGGAAATGATGTTGGATCAGGAGCTCCTCGTAATCGTGTTGGGCAAATTTCGCACAGTGTGGTTCTAGGGACTTTTAATGTGGGGGAACAGGGTGAAGGCATTTCGCAAGACCTTACTCGGGTTATTGGGGCAGTTTTGAATTCATTTGCGAATGGGGGCCAGAGCACAATTAATGTTCCTAATTCCACACAAAATTCTTCAGCTCCGCCAGGGAATGAAACTGAAGGAAATCAAGCTGGAAATCAAAGTCTAGCCGGAAATCCGGCACCATCTGGACAGCCATTTCCTGGTCAAGCATTCCAATCACTGCCTCATGTTGTTCAGATTCCTATGGCAGCAGGAGCTATACCTGTTCCTTCTTTCAATGCACCAATTCCTGATTCACTGAGCACACTGTCTGAGTTCATAAATCGCATGGAACATACACTTTCACGAAATGGTTATGGGCCAAATGTATCTTCAACTAACCTTGGAGATCAACGAGTGGAATTGCCTTCCAATACACAAGGGTTGCCGACACTTGAAGCGCTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCACTATCTCATATTGCAGGGCGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTATAAGAGGTCAAATACAGTCAGAGTCAGCACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGGTCTTCGgCAGAATCTGTTGTTAATTCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCGAATCCTATAATGGCGCAGCCATTTCCACTCCAGACAAGTTCCCTCTTTGGCGGTccactttcttcttcaactccTGCAACTTTAGGCACCGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACACGCTGCTGGTGCCTCTCTTGCACCAATTGTTTCAGCAATTGGCTCTAGACCAAATAATGGGGAAGGGACGAGGACTGAACATCGTAGTGAGCCTGGTTCTGGGGATTCAGGTTCGACACGGGTTTTACCTGTTAGAAATGTTCTATCAGCAACTCTCCCATCCAACCCTTCTGGCATCGGAGCTGCTGGTAGCACACCAACTGGATTTAGTATTTCTACTTCACAGCTACCATCTGGTTCAGCTCCATTATCATCTGTTTTAGCGGAAATCCATTCTCGGCTTAGAAACTCTGTTGGCAATATGCAAGGAGATAGCACAGTTCTGTCAGGCCAAATGCAATCAGCTAGCAGGGACTTGTCTTCTGGATCTGAACCAAGACCCACACATGTAAATGAACAGAGAGATACTGTGGAGACAAATGGATGTGGGGATGCCGGTGCATCCTCAGTTGGTTGCACTTCTGAAAGTGTAGTAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTTGTTCTAGTGGAGAAACAACAGTAAAATCAGAGAAAGTACAGGATGCTCCATCTGTAAGTGAAAGACGAGATGCAACTGAACCTGCCAAAACTGCTCCTCTTGGACTCGGTGTGAGTGGTTTGGAGCGTAAGAAACGAACCAGACTTCAACCTCCTGTTGGCAAAGCTGCTGATGACGGATCCTCCAGTTCTTCCATCAATCGAAGTCAGGAAACAAGGACAGATAGTCAAAATGCTGTTAATTTGATAAATGCTGACCGGCCATCATCTCAGCGACCCATACCCTCCGGTGGTAGTCAGATTGATGTGGCAGGTTTAATGTCTCAGGTTCTACACAGTCCTGCTCTGAATGGTTTGCTGGAAGGGTTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTAAGGAACATGTTGCAGCAGTTCACTCAAAGCCCACAGATGATGAACACGGTCAATCAGATTGCCCAGCAGGTTGGCAGTCAGGATATGGGGAACTTGTTAACTGGAACGGGAAGAGGGCAGGGTGGTAGCGTTGATTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCACTATTCTCTGCTGCAGAACCAGAAACCCGTGAACCCTACGGGAATGAACATTCCGATAATCGAAGTTTACAGCTTGACCTTCAACCAGTGGTAGAGAGGATTGGTCGCCCAAGTCCACCTACAGATGTCTTCCGTGCTGTAGCTGAAAATGCTGTACAGCTGTCTGGCAGTGGAAGTACTTCTGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATGTGGAGATGTTGCGATATGATGTAAATCAGCTGCTCGAAGGACGTTCGAAGAGGGACAAGTCCTAA 2790 0.4516 MAYQSSSSNEGGPSNLNVSPDSSDSTVHLNIKTLDSRIYTFQVHKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPSQSQTPGTASGETTSTTGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGISQDLTRVIGAVLNSFANGGQSTINVPNSTQNSSAPPGNETEGNQAGNQSLAGNPAPSGQPFPGQAFQSLPHVVQIPMAAGAIPVPSFNAPIPDSLSTLSEFINRMEHTLSRNGYGPNVSSTNLGDQRVELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGIRGQIQSESAQIGIAMQHLGALLLELGRTMLTLRMGRSSAESVVNSGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAAGASLAPIVSAIGSRPNNGEGTRTEHRSEPGSGDSGSTRVLPVRNVLSATLPSNPSGIGAAGSTPTGFSISTSQLPSGSAPLSSVLAEIHSRLRNSVGNMQGDSTVLSGQMQSASRDLSSGSEPRPTHVNEQRDTVETNGCGDAGASSVGCTSESVVEKPQTEAIKTCSNDERDVLVDKFVSSSSNQDLQSCSSGETTVKSEKVQDAPSVSERRDATEPAKTAPLGLGVSGLERKKRTRLQPPVGKAADDGSSSSSINRSQETRTDSQNAVNLINADRPSSQRPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQQVGSQDMGNLLTGTGRGQGGSVDFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETREPYGNEHSDNRSLQLDLQPVVERIGRPSPPTDVFRAVAENAVQLSGSGSTSDDLLDELCCNESLASEYVEMLRYDVNQLLEGRSKRDKS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00156 929 MobiDBLite consensus disorder prediction 617 728 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 827 850 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 448 475 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 617 641 - -
Tsu01g00156 929 PRINTS Ubiquitin signature 58 78 IPR019956 -
Tsu01g00156 929 PRINTS Ubiquitin signature 79 100 IPR019956 -
Tsu01g00156 929 PRINTS Ubiquitin signature 37 57 IPR019956 -
Tsu01g00156 929 SMART ubq_7 27 98 IPR000626 GO:0005515
Tsu01g00156 929 MobiDBLite consensus disorder prediction 175 218 - -
Tsu01g00156 929 ProSiteProfiles Ubiquitin domain profile. 27 102 IPR000626 GO:0005515
Tsu01g00156 929 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 12 927 - -
Tsu01g00156 929 SUPERFAMILY Ubiquitin-like 19 101 IPR029071 -
Tsu01g00156 929 CDD Ubl_ubiquitin_like 29 96 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 95 131 - -
Tsu01g00156 929 Gene3D - 16 111 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 533 562 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 684 724 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 95 124 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g00156 929 PANTHER OS07G0498800 PROTEIN 12 927 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 569 597 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 175 219 - -
Tsu01g00156 929 MobiDBLite consensus disorder prediction 533 597 - -
Tsu01g00156 929 Pfam Ubiquitin family 29 99 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00156 Tsu-Chr1 1218865 1229323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00156 31 98 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 2.41e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00156 - - mtr:MTR_1g026290 1379.39