Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00146 ATGCCGGGAGATATTAATGCTCAGCAATTCTTTACTGGGTACACAAATAGTCGCTTGGATAGGCCGCTTAAGTGGCCACaagttttgaaattgaaagattGGCCTccttctaatttatttaaagaaagtTTCTCCCGTCATTGTGCCGAGTTCATATCATCCTTGCCATATAAAGAATATACAGACTATATCAGAGGTGTTCTTAACCTTGCTGCGAAGTTGCCTTATGGTGTTCTAAAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCCGGAGCTTGGGCGGGGTGATTCCGTGACTAAGCTCCATTGTGATTTGTCTGATGCATCTGATAGCATTGAAGCCATTAAGAAACTGACACAAATGCACCTCAAGCAAGACAAGAGGGAGCTACATCTATATGGTGATAATCAAGATGGAGAGACTAATGTTGGCATGCTTGATAATTCATTCCCTTGGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCTAAATTGGAAAAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAAATCAGGTTATCCACCTCATCCATGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTAAAGGAGGAGTATGGAATTGAGCCTTGGACAATTATTCGGAGGCTAGGAGATGCTGTTTTCATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGCCGGGCTTGGTTTTGTCTCACCTGAAAATGTTGGTGAGTGTTTCCGTTTGACAGAGGAATGCCGTAAGCTTCCGATAAACCACATGTCCGCCAAGGACAAGTTGGAGGTGAAGAAAATAACTATATATGCGATGCTTGATGTGGTTGAAAAATTGGAGGAAGCAAGGTGGAAGAAACCAATGATTTAG 954 0.4119 MPGDINAQQFFTGYTNSRLDRPLKWPQVLKLKDWPPSNLFKESFSRHCAEFISSLPYKEYTDYIRGVLNLAAKLPYGVLKPDMGPKTYIAYGFAPELGRGDSVTKLHCDLSDASDSIEAIKKLTQMHLKQDKRELHLYGDNQDGETNVGMLDNSFPWGDSLDGALWDIFRREDVPKLEKYLKKHFREFRHVHCSPLNQVIHLIHDQTFYLTLEHKRKLKEEYGIEPWTIIRRLGDAVFIPAGCPHQVRNLKSCIKAGLGFVSPENVGECFRLTEECRKLPINHMSAKDKLEVKKITIYAMLDVVEKLEEARWKKPMI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00146 317 Gene3D Cupin 2 286 - -
Tsu01g00146 317 CDD cupin_RmlC-like 178 249 - -
Tsu01g00146 317 SUPERFAMILY Clavaminate synthase-like 30 293 - -
Tsu01g00146 317 Pfam JmjC domain, hydroxylase 164 255 IPR003347 -
Tsu01g00146 317 ProSiteProfiles JmjC domain profile. 63 277 IPR003347 -
Tsu01g00146 317 SMART cupin_9 44 277 IPR003347 -
Tsu01g00146 317 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 4 309 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00146 Tsu-Chr1 1130612 1135222 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu01g00146 JmjC 3.1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00146 K15601 - pop:7477121 391.734