Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00143 ATGAAACAAGAAAACAGTTCATTTGCTGGAGGGGATTCCTTGGACGGTGCTCTCTGGAATATTTTTCGCAGAGAGGATTCCTTTAAAGCAGGAATTGAGCCTTGGACTTTTATTCAAAAGCTAGGAGATGCCATTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGCTGCACTTGATTTTGTCTCTCCTGAACACATTGGTGAGTGCTTCCGTTTGACAGAGGAATGTTGCAAGCTTCCCATAAATCACAAATCAGCTGAGGACAAATTTGAGATACTCCGAGGTAAGAAACTAATCCTATGA 327 0.422 MKQENSSFAGGDSLDGALWNIFRREDSFKAGIEPWTFIQKLGDAIFIPAGLPHQVRNLKSCIKAALDFVSPEHIGECFRLTEECCKLPINHKSAEDKFEILRGKKLIL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00143 108 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 105 IPR045109 GO:0032454|GO:0033169
Tsu01g00143 108 SUPERFAMILY Clavaminate synthase-like 16 98 - -
Tsu01g00143 108 Gene3D Cupin 28 94 - -
Tsu01g00143 108 Pfam JmjC domain, hydroxylase 20 68 IPR003347 -
Tsu01g00143 108 ProSiteProfiles JmjC domain profile. 1 85 IPR003347 -
Tsu01g00143 108 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 30 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00143 Tsu-Chr1 1110533 1112132 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu01g00143 JmjC 7.1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00143 K15601 - gmx:112997634 135.961