Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00140 ATGTTTGGAATTTCTATTCCTCGTCGAAACACCGTCGTCgagaatgaagaaaaaaaggcTGATATCATTCGTCGTCGTCGTGAGGATCGCGACAGAGGATTCTTCTCAAATTATGAGGATGTCACGGCGCATCGGAGTATGATACAGGACACTCATCGGATGGAGGCCTATAACTCGGCAGTGCTTTTTCATAAGGATCGCATAGAAGGGAAAGTTATTGTTGATGTTGGTTGCGGCACTGGTATCTTATCCATTTTCTGTGCAAAGGCTGGAGCTAGGAAGGTTTACGCCATTGAGGCGTCTCAGATGGCTCTACATGCTAAGAGCATCATTGAGGCAAACGGATTTACAGATATTATAACTGTGGTGAATAGCACAGCTGagGAGGCAACAATATCTGAGAAAGCTGATGTCATCATATCCGAGTGGATGGGCCATATGCTCTTTCAAGAGaacATGCTGCCGTCGATCATTTCAGCCAGAGACCGGTGGCTTGCGGCTGGAGGATTACTGCTTCCTACCTCTGCAACGTTGTATATGGCTCCGTTTTCGGACAGCAAGAGGTATCATAGAAACGTTGGTTTCTGGGCCAATGTCGATGGAGTAGATAtGTCTGTGTTGATCCCGTTGATGAAGGATTCTAGTCCTTCAGTGGAGACTGTTGATCAGGAGTGTCTCTTGGGAGAGCCTCACGAGgTGATCAAGGTCGACCTGTACTCGATTACCAGAGCCGAGATTGATTTTATCACCACAGAATTTAGTTTCAAACCTAATAGGAGCGCACCATTACATGGCTTTGCATTCTGGTTTGTTGCTGATTTTTCTGAAGATGCCATGTTTGATGTACATTATGAGGATATGGTGCTTGCTCCAGTACCATTGCTATCTACTGCTCCAGATGCACCCTCTACTCACTGGATGCAgACTTTGTTAGACTGTCCTGATCCACTTCATGTAGAAGAAGATCAGGTGATCGAAGGaattttaaatatagaaattgaGGAATTCGATCACCGGCTTCTCAGAATTTCTCTGAAATATGGGTTGGATGGTGAATTGATTGAGCTTGAGACACAATTCTGA 1083 0.4358 MFGISIPRRNTVVENEEKKADIIRRRREDRDRGFFSNYEDVTAHRSMIQDTHRMEAYNSAVLFHKDRIEGKVIVDVGCGTGILSIFCAKAGARKVYAIEASQMALHAKSIIEANGFTDIITVVNSTAEEATISEKADVIISEWMGHMLFQENMLPSIISARDRWLAAGGLLLPTSATLYMAPFSDSKRYHRNVGFWANVDGVDMSVLIPLMKDSSPSVETVDQECLLGEPHEVIKVDLYSITRAEIDFITTEFSFKPNRSAPLHGFAFWFVADFSEDAMFDVHYEDMVLAPVPLLSTAPDAPSTHWMQTLLDCPDPLHVEEDQVIEGILNIEIEEFDHRLLRISLKYGLDGELIELETQF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00140 360 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 31 336 IPR025799 GO:0016274|GO:0018216
Tsu01g00140 360 Gene3D Vaccinia Virus protein VP39 27 173 IPR029063 -
Tsu01g00140 360 CDD AdoMet_MTases 73 172 - -
Tsu01g00140 360 Pfam Ribosomal protein L11 methyltransferase (PrmA) 69 150 - -
Tsu01g00140 360 Gene3D - 175 357 - -
Tsu01g00140 360 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3 25 347 - -
Tsu01g00140 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 38 352 IPR029063 -
Tsu01g00140 360 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 25 347 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00140 Tsu-Chr1 1081100 1088996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00140 22 327 C2H2 Transcription Factor Family AT3G12270 35.276 1.44e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00140 K11437 - ini:109160327 319.316