Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00124 ATGCTTGATAATGTGGATAATATTCATCATTTCGTCGACTCAACTTGGAGACTATGCACTGTTGTAGGTGGTTGGTTTTCTGGTTTAATTTCAAAACCTTACAGAAAAGTGGTTGGCTCTAGGTTGGCCGAGGAAAGAGAAAATTATTATCTAGATTCCATGGATCAGTGTATATATATTAGTTCGTCGGATGATGATTTGGAGGAGATAGAAGATCCTGGAAGGCTTCTCCCAAAATGGGCTGGTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATAGTTCAAACGCGAGCTcttctaatatttttaatcattcacAAGTTAAGCCCCATAATCAACCTGGTCCCAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATACTAACGGTGCCAATTATGAGAAAATGTCATCTCAACAAGCTTTCAACAGGACTCTTCCATCATCTTTTCAGTCATCTGCAACAAGGTCTCTTCCACCTTCGTCATTTGCACCTAATAACAGATTAAGCAATAGCCAACTTAATGATCCATACCGGAGTCGCCACCATGGCGCAGGACCTAGCACGTCCAGTGAGAAGGGCTTTTTTCGCGACAATTTTGGCAGAGGTAATGACGGAGATCGTTTCATGAATCAGAATGGAGGGATCAGGTCTCTTCCCCCATCTTTGATGCATGGAAAGGCTATAACTCCACCATTTGCCAGTTCTAGTGAATCTGCATACCATGCTGGAGCAGGTGATGAAAGGGCTTCTACAGCTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATCTCAGTCAACCCTTAAAAGAAGCCGATTTACCTGCTGGCATAATGTCTGTCCCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACGATTTCAACGATAGCTCTCATCCTAATGCAAAGGCAATCACAGTCAAAATGGAAAACAGATGATACATGCAACCATAAAGCTGAAGCCTTGAatttggatgatgatgatgataatggtaGTATTGACGTGGACAAGATTAAAAATGATGAAGAACCCAGTGATGTAAAACCTATTATTGAAGCCAGCAGTTCAACACGGGCCCCAGGTAGGAAAAGGCCAGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAaagctttctgttttgatttttcatggGGGCAGTAGGACAAAGGATCCCGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCGTTAGTTGATGATGAGGATATTGATGAAAAAGATGGGGAAAAGTTTGGTTTATCCTCCGATTTTTCTGGCAGTAAAAAGAGGAAAAAGACATATAATGGAAGTAAGAAGGGTAAAAAAGGTAGAAAAGGAATAGACAGTTCTTCTTTCGATTGTGTTTCTGGTGCTCTTGCAAAAGTTGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACACCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCCATTCAAGGTTATAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTTCGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCTCCTAAAACAATTAATCTGAGTAAAGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAagGCATATGCGGCTGCTGGCACAGTAAATCAAAACTATGCAAATATCCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCATCCGCTTCTTGTTAAAGAATATAGTTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAACTTCCAAAGGACATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCCATATGTTGTGTCTGCAATGATCCACCCGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTATCAGAGCATTTGACAGGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGACGAACTTGGTGGCAGTAGTTCTGGAAATTCGAGTCTTGTTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGCAAATTGAAGACTCCTTTGCTGAATTCCTCCGAAGGAAATAGAGATTCACTGCCTTCTGATGATTCAGATATTGAAGATTTTGATGCAGATGTCAAGGTTATAAAACACACAACAAAGTATTCAGAGTGCACAACTGGAGGACCGCTAAAGGCTATAATTTTTTCTCAGTGGACAAGTATGTTGGACTTAGTTGAGACGGCAATGGAGCAGTCTGGCGTAAAATACAGGAGACTTGATGGTAGGATGACTTTGACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACGGTTATGCTGATGTCACTGAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGGCAGACTCGCCCTGTTACTGTGACACGGATCACCATTAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGgaagaaaagagaaaaatggtgGCATCCGCCTTTGGTGAAGACCATGCTGGTGGCTCTGGAGCTAGGCTTACTGTTGATGATCTGAAATATCTTTTCATGGTCTAG 3117 0.4033 MLDNVDNIHHFVDSTWRLCTVVGGWFSGLISKPYRKVVGSRLAEERENYYLDSMDQCIYISSSDDDLEEIEDPGRLLPKWAGSERNSDSRRANSSNASSSNIFNHSQVKPHNQPGPSNGSTSQHQTVNSRISNTNGANYEKMSSQQAFNRTLPSSFQSSATRSLPPSSFAPNNRLSNSQLNDPYRSRHHGAGPSTSSEKGFFRDNFGRGNDGDRFMNQNGGIRSLPPSLMHGKAITPPFASSSESAYHAGAGDERASTADERLIYEAALQDLSQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQSKWKTDDTCNHKAEALNLDDDDDNGSIDVDKIKNDEEPSDVKPIIEASSSTRAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVDDEDIDEKDGEKFGLSSDFSGSKKRKKTYNGSKKGKKGRKGIDSSSFDCVSGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYSSDPVGKDSVEMAKKLPKDMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQLGEDLVFSKATLRSCISDELGGSSSGNSSLVDYSLVQNSDYSSSKIKAVLEVLQSNCKLKTPLLNSSEGNRDSLPSDDSDIEDFDADVKVIKHTTKYSECTTGGPLKAIIFSQWTSMLDLVETAMEQSGVKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00124 1038 ProSitePatterns Zinc finger RING-type signature. 750 759 IPR017907 -
Tsu01g00124 1038 SMART ultradead3 286 598 IPR014001 -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 353 374 - -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 151 201 - -
Tsu01g00124 1038 CDD SF2_C_SNF 885 989 - -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 75 128 - -
Tsu01g00124 1038 SMART helicmild6 897 980 IPR001650 -
Tsu01g00124 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 619 IPR027417 -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 151 220 - -
Tsu01g00124 1038 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 86 1037 - -
Tsu01g00124 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 1037 IPR027417 -
Tsu01g00124 1038 Gene3D - 383 472 IPR038718 -
Tsu01g00124 1038 SMART ring_2 735 773 IPR001841 -
Tsu01g00124 1038 Pfam Zinc finger, C3HC4 type (RING finger) 735 771 IPR018957 GO:0046872
Tsu01g00124 1038 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 86 1037 - -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 467 511 - -
Tsu01g00124 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 785 IPR013083 -
Tsu01g00124 1038 Pfam SNF2-related domain 293 696 IPR000330 GO:0005524|GO:0140658
Tsu01g00124 1038 ProSiteProfiles Zinc finger RING-type profile. 735 771 IPR001841 -
Tsu01g00124 1038 Pfam Helicase conserved C-terminal domain 885 980 IPR001650 -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 467 492 - -
Tsu01g00124 1038 Gene3D - 786 1036 IPR027417 -
Tsu01g00124 1038 MobiDBLite consensus disorder prediction 87 128 - -
Tsu01g00124 1038 CDD DEXDc_SHPRH-like 290 619 - -
Tsu01g00124 1038 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 581 IPR014001 -
Tsu01g00124 1038 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 867 1033 IPR001650 -
Tsu01g00124 1038 Gene3D - 266 348 IPR038718 -
Tsu01g00124 1038 Gene3D - 486 632 IPR038718 -
Tsu01g00124 1038 SUPERFAMILY RING/U-box 733 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00124 Tsu-Chr1 941948 952025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00124 54 938 RAD5 or RAD16-like Gene Family AT1G50410 56.559 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g00124 SNF2_N 1.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00124 - - gmx:100811598 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00124 01 941948 952025 Tsu01g00124 01 941948 952025 ECH