Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00123 ATGGCAACAAAGGGAATGAAAAGAGTTGGTGCTGTCGATTCTCGTTCTGCTTCCGTTCTTGTTCGTGCCAGAGATGGCAGTGCTTTCGCTAAATGTGATGAGTGCAAGAAAGATGTTCCTGTGGCACTCATTAGCATGCACGATTGTAGCCTTGAAGCCAAAATCAAAATGAACCTTGATGCTCAAGTTATTGAGCAAGCTGCTGAAGTTAAGAAAACTGAGAGgAAGAAACCTAAATCGAAAGAACCGATTGCTAAAAGGGCTAAGGTTGGGAAAGAGAAAAAGGTTAAGGATCCTAACATGCCCAAGCGTCCTCCTACTgctttctttgttttcttGGATGATTTTAGAAAAACATTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATACGAGAAGGCTATGGAAATCTATAATGCTACTGCAAAGGAAGATCAAGAAGAGGGTTCTGATAAGTCTGATAAGGAAGCCCCTGCAGCAGAAGAGGTGGAAGAGTTAACAGATGAGGAGTAG 609 0.4089 MATKGMKRVGAVDSRSASVLVRARDGSAFAKCDECKKDVPVALISMHDCSLEAKIKMNLDAQVIEQAAEVKKTERKKPKSKEPIAKRAKVGKEKKVKDPNMPKRPPTAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWRSLTDEEKKPYLDRVIELKAEYEKAMEIYNATAKEDQEEGSDKSDKEAPAAEEVEELTDEE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00123 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 191 - -
Tsu01g00123 202 SMART hmgende2 101 172 IPR009071 -
Tsu01g00123 202 MobiDBLite consensus disorder prediction 68 101 - -
Tsu01g00123 202 MobiDBLite consensus disorder prediction 171 192 - -
Tsu01g00123 202 Gene3D High mobility group box domain 85 187 IPR036910 -
Tsu01g00123 202 SUPERFAMILY HMG-box 89 172 IPR036910 -
Tsu01g00123 202 MobiDBLite consensus disorder prediction 171 202 - -
Tsu01g00123 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 191 - -
Tsu01g00123 202 MobiDBLite consensus disorder prediction 68 105 - -
Tsu01g00123 202 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Tsu01g00123 202 MobiDBLite consensus disorder prediction 125 145 - -
Tsu01g00123 202 CDD HMGB-UBF_HMG-box 102 168 - -
Tsu01g00123 202 Coils Coil 160 180 - -
Tsu01g00123 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00123 Tsu-Chr1 932539 934160 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu01g00123 HMG_box 1.1e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00123 K25507 - gmx:100306558 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00123 01 932539 934160 Tsu01g00123 01 932539 934160 ECH