Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00113 ATGGTGAACATGATGGAGTGGCAGAAACAACAAGTTCAGAATGGTAATGTTGAAGCCATGTATGTCAAAGTCATGACTGATGAACAATTAGAAACTCTCAGGAAACAAATTGCTGTTTATGCTACCATTTGTGAACAACTTGTTCAGATGCACAAAACACTCTCTGCTCAACAAGATCTTGCTGGAGTTAGGCTGGGAAATTTATACTGCGACCCATTGCTGACATCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCACTTCAGCTCCAGATTCTCGAACGCATATTCGATCAGGGAAATGGAACTCCgagcaaagaaaaaatcaagGAGATTGCTACTGAACTAAGCCAGCATGGCCAAATATCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCgaaaagaaaaatgcaaaatgGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAAGTCGATTCCAAAGATAAGAAGACAAAACCAGAGGAATTTATGTCTCAACAAAATGTTGCTGCAGGGGATGAAAATTTGTGCTTCCAGAACCCTGAAAAATGCTCTGAAATGCAGTACTTGAATCCAGATTCTAACAAAGCATATTCCATTTTTCCATCGGATGGCGGTGTAAGATCAACAAGAAATTTGAGTGGTCCATCTCTTTACGATGAAGTGCTGTCAAACTCAAGGAATGACTATCTAGCTGGAAAAATGGAAGTACCTGGGAGTTACAATTTATACCAGCAAGCAGATGACTACAATTTGGCAGGTTGA 795 0.3887 MVNMMEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVQMHKTLSAQQDLAGVRLGNLYCDPLLTSGHKITSRQRWTPTPLQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFMSQQNVAAGDENLCFQNPEKCSEMQYLNPDSNKAYSIFPSDGGVRSTRNLSGPSLYDEVLSNSRNDYLAGKMEVPGSYNLYQQADDYNLAG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00113 264 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 263 IPR044559 GO:0003700
Tsu01g00113 264 SUPERFAMILY Homeodomain-like 82 146 IPR009057 -
Tsu01g00113 264 SMART HOX_1 81 148 IPR001356 GO:0003677
Tsu01g00113 264 MobiDBLite consensus disorder prediction 141 170 - -
Tsu01g00113 264 Gene3D - 84 149 - -
Tsu01g00113 264 Pfam Homeodomain 83 143 IPR001356 GO:0003677
Tsu01g00113 264 ProSiteProfiles 'Homeobox' domain profile. 79 144 IPR001356 GO:0003677
Tsu01g00113 264 CDD homeodomain 83 145 IPR001356 GO:0003677
Tsu01g00113 264 PANTHER - 3 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00113 Tsu-Chr1 851927 854899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00113 20 264 Wox Gene Family AT4G35550 53.008 1.78e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu01g00113 Homeodomain 3.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00113 - - pvu:PHAVU_007G011600g 381.333