Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00110 atgaagagagaaagagaaagtgATCTTAATACTAATAGTATAACCATGGCTAAATACTTGATGTTACTTTCTGGTGGAGAATTTGATCAAGTGAACTACTCTTCAAATTTCAACAACCGTGTCTTCGAGTGCAAGACATGTAAAAGACAATTCTCGTCGTTTCAAGCGTTGGGAGGACACCGAGCAAGTCACAAGAAACCGCGGTTGATGGAGATGATGAATGATGGTGATGATCATTCACTTGCAACAAAAACAAAGGCTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTGCAATAGGACAAGCTTTGGGTGGTCACATGAGAAGACAtagaaaaacaacatcaaaagTTTCTAATAATTCAAATGGAAACATGCACAATTTTATGACTACGACAACTACTAGTAGTAGCAATAGTGGTGGCAGTACTATTGATAATAGTGCTAATACTAATTCAGCAAAGAGGAACAAAGGGAACACCAATAATAgatttttgtttcttgatttGAATTTGACACCTTTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAACTCTTAATTTGGTGGATTGTTTcaattga 594 0.3199 MKRERESDLNTNSITMAKYLMLLSGGEFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMMNDGDDHSLATKTKAKTHECSICGLEFAIGQALGGHMRRHRKTTSKVSNNSNGNMHNFMTTTTTSSSNSGGSTIDNSANTNSAKRNKGNTNNRFLFLDLNLTPLENDLKFLKIGQSTLNLVDCFN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00110 197 MobiDBLite consensus disorder prediction 134 161 - -
Tsu01g00110 197 Gene3D Classic Zinc Finger 39 112 - -
Tsu01g00110 197 PANTHER ZINC FINGER PROTEIN ZAT5 15 183 - -
Tsu01g00110 197 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tsu01g00110 197 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Tsu01g00110 197 PANTHER ZINC FINGER PROTEIN ZAT12 15 183 - -
Tsu01g00110 197 SMART c2h2final6 90 112 IPR013087 -
Tsu01g00110 197 SMART c2h2final6 42 64 IPR013087 -
Tsu01g00110 197 Pfam C2H2-type zinc finger 90 114 - -
Tsu01g00110 197 Pfam C2H2-type zinc finger 41 67 - -
Tsu01g00110 197 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
Tsu01g00110 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Tsu01g00110 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00110 Tsu-Chr1 835033 835941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00110 10 113 C2H2 Transcription Factor Family AT5G59820 55.769 1.20e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g00110 zf-C2H2_6 7.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00110 - - gmx:100816598 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00110 01 835033 835941 Tsu01g00110 01 835033 835941 ECH