Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00107 ATGGTTCTATCAAAGAAGAAGCTTAAACAGAAGCTTAGAGCTGAATCGAAtccttcttcatcttccaaCTCTCTTAAAAATCTTCTTCACTCTTCTACCAACAAACCCGTTTTGTCTAAGAGAGAAAAACTCCGAAAGATTCGACCTTTACAACAAACTGAACAACCCAATGAAGATGAAGGAACCAAAACAAAGGAAATTGGGAGTGAGGGTTTGGAAAAGAAGaacaataaaaagagaaaaaggaacGATGTTGATTTTGTGGCTAGCGAGGTTGTTGTTAAGGAGGATACAAGCAAATCAGTGAAAAGGAgtgatgatgttgatgttgtGGCTAATGAGGTTGTCGTCGTTAAGAAGAGAGTAAAACCCCGATGGATTCGAGCAGATGAAATTAGGCCTGAGGATTTGGAAAATAAGAacattaaaataagaaaaaggaaattGTCAGAGAAACAGAatgatggtgatgttgttgttgttaaggATGCTGTTAAGGTTATTAACAAATCAATGAAAAAGAAGGAGatacaaaagaagaagaatctgCAGAAGAAGATGAGAAAGAAGAATAAAGCTCCAGAGGAAAATACCAAAACTGTAGTAGAGGCAAGTTCCAAAATTGCAGAGGAAAATGATTCTAATCATCAAGAGGAATTGCCGCAATCTAATGCATTGGTTAACACCAATATCACTGCCAGTCAAGAAAATGGTGATGCTTCTACAAAAGTTTATGTTGGAGGAATTCCCTTCTATTCAAGTGAGGATGACATTCGGAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCCGACACCGGCAAGTTTAGAGGGATTGCAATTATTAGTTATAAGACTGAAGCAGCAGCCAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTTTTTCTTAAAATTCAACCTTATAAAGCAGCTCAAGCAACCCGGTTTACTCCGGAATTGAAGGAAGGATACAATAGAATATATGTTGGAAGTTTGTCATGGGAAATAACAGAGGAAGAGCTGAGGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTTGGTACGGACAAGGAAACGGGAGAATTCCGAGGGTATGCTCATGTAGATTTCAGCGATAGTAAGTCACTAAAGACAGCACTTGCATTGGATCAGAGTGTGTTGTTTGGAAGGCCTGTCAGAATAAGCTGTGCAGTTCCTTTGAAGAAAAAACCAGATGCGGGTGAAAAATCAGTTGCTGGTTCTAAACAAGGTGCAGGTGAAAAATCAGTTGCGGGTTCTAAACCAGGTGCCGTTGAAAAATCAGTATCAGGTTCTGTTGAAAAATCAGTTGCAAGTTCTAAACCAGTTTCAGGTGAAAAATCAGTTGCAGGTTCTAAACCAGATGCAGGTGAACAATCAGCTGCAGTCGAGAAACCAGATGCTGGAGAAAAAGAAACTGTTGAGAAACCACCAAGTTCTGTTGTAAGTGGTGGCAAGAGGAAGAATAGGATGTGCTATGGTTGTCGTCAAAAAGGACATAATCTGTCAGAATGCCCAAACCAACAAACAGTTGCCTCTACTACAATCTAA 1602 0.367 MVLSKKKLKQKLRAESNPSSSSNSLKNLLHSSTNKPVLSKREKLRKIRPLQQTEQPNEDEGTKTKEIGSEGLEKKNNKKRKRNDVDFVASEVVVKEDTSKSVKRSDDVDVVANEVVVVKKRVKPRWIRADEIRPEDLENKNIKIRKRKLSEKQNDGDVVVVKDAVKVINKSMKKKEIQKKKNLQKKMRKKNKAPEENTKTVVEASSKIAEENDSNHQEELPQSNALVNTNITASQENGDASTKVYVGGIPFYSSEDDIRSYFEGCGTITEINCMTFPDTGKFRGIAIISYKTEAAAKRALALDGSDMGGLFLKIQPYKAAQATRFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRFGTDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLKKKPDAGEKSVAGSKQGAGEKSVAGSKPGAVEKSVSGSVEKSVASSKPVSGEKSVAGSKPDAGEQSAAVEKPDAGEKETVEKPPSSVVSGGKRKNRMCYGCRQKGHNLSECPNQQTVASTTI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00107 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 410 IPR000504 GO:0003723
Tsu01g00107 533 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 145 530 - -
Tsu01g00107 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 310 IPR000504 GO:0003723
Tsu01g00107 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 403 IPR000504 GO:0003723
Tsu01g00107 533 Gene3D - 156 322 IPR012677 -
Tsu01g00107 533 CDD RRM1_PHIP1 244 315 IPR034361 -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 514 533 - -
Tsu01g00107 533 CDD RRM2_PHIP1 335 406 IPR034362 -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 175 201 - -
Tsu01g00107 533 SUPERFAMILY RNA-binding domain, RBD 218 321 IPR035979 GO:0003676
Tsu01g00107 533 SUPERFAMILY RNA-binding domain, RBD 327 425 IPR035979 GO:0003676
Tsu01g00107 533 MobiDBLite consensus disorder prediction 14 35 - -
Tsu01g00107 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 319 IPR000504 GO:0003723
Tsu01g00107 533 Gene3D - 323 417 IPR012677 -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 449 463 - -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 518 533 - -
Tsu01g00107 533 SMART rrm1_1 243 315 IPR000504 GO:0003723
Tsu01g00107 533 SMART rrm1_1 335 406 IPR000504 GO:0003723
Tsu01g00107 533 MobiDBLite consensus disorder prediction 36 85 - -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 1 85 - -
Tsu01g00107 533 SUPERFAMILY Retrovirus zinc finger-like domains 500 527 IPR036875 GO:0003676|GO:0008270
Tsu01g00107 533 Coils Coil 173 193 - -
Tsu01g00107 533 MobiDBLite consensus disorder prediction 415 507 - -
Tsu01g00107 533 ProSiteProfiles Zinc finger CCHC-type profile. 509 524 IPR001878 GO:0003676|GO:0008270
Tsu01g00107 533 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 145 530 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00107 242 408 Eukaryotic Initiation Factors Gene Family AT2G36660 27.473 1.39e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00107 - - mtr:MTR_1g115375 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00107 01 819068 822476 Tsu01g00107 01 819068 822476 ECH