Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00105 atgGCAATCTACAGAATAGCAATTGGGTCTCCTAGAGAGGCTAGTAATCCTGCTGCCATTAGAGCTGCTTTTGCAGAATTCTTCTCTatgatcatttttgtttttgctggCCAAGGCTCTGGAATGGCTTACAGTAAACTTACAAAGAATGGAGCTGCAACTCCTGAAGGTCTAATAGTTGCATCATTATCTCATGCATTTGGGTTATTTGTGGCTGTTTCTGTTGGTGCAAACATTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACCTTCTTGAGAAGTATTTTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTCAATTCTTGCACTGGTGGAATGgaaaTATCAGCTTTCTCACTATCCTCAGGCGTGACTGTGTGGAATGCATTAGTTTTTGAGATTGTGATGACATTTGGATTGGTATATACAGTATATGCAACAGCAATAGACCCAAAGAAAGGGAATGTTGGTGTTGTAGCACCACTAGCAATTGGTTGTATTGTAGGAGCCAATATCTTAGTTGGTGGTGTTTTTGATGGTGCATCAATGAACCCTGCTGTGTCATTTGGACCTGCTGTGGTTAGTAGGACATGGACTCATCATTGGGTCTACTGGGTTGGACCATTCATTGGGTCAGCTGCTGCTGCCATTCTCTATGATAATATCTTTATTGCTGATGATGCTCATGAACCCCTTTCAAATAGTgacttttag 759 0.3979 MAIYRIAIGSPREASNPAAIRAAFAEFFSMIIFVFAGQGSGMAYSKLTKNGAATPEGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIAQLLGSVVACILLNSCTGGMEISAFSLSSGVTVWNALVFEIVMTFGLVYTVYATAIDPKKGNVGVVAPLAIGCIVGANILVGGVFDGASMNPAVSFGPAVVSRTWTHHWVYWVGPFIGSAAAAILYDNIFIADDAHEPLSNSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00105 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Tsu01g00105 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00105 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Tsu01g00105 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Tsu01g00105 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Tsu01g00105 252 SUPERFAMILY Aquaporin-like 16 241 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00105 Tsu-Chr1 811611 813291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00105 1 252 Major Intrinsic Protein MIP AT4G01470 80.556 4.27e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00105 K09873 - gmx:100818197 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00105 01 811611 813291 Tsu01g00105 01 811611 813291 ECH