Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00103 ATGATGGGTTCCAGGGGACTTTTCGGGTGGTCTCCACCTCATGTTCAACCTCTGACGCCGGTGTCTGAGGTTTCTGAGCCGCCGGAGTCGCCTTCACCGTATATGGACCTTGGTGCAGAGACTTCTGCGTCGCAGCAAATGGAGGCGGAGGAGGAGATGGAAGAGATGGAAGATATTGAGCCGCCGCCAGCTTCTGTTCCTTTTTCTCAACTGTTTGCTTGTGCTGACCGGTTTGACTGGTTTCTTATGGTGGTTGGTtctgttgctgctgctgctcaCGGCACTGCTCTTGTTGTTTACTTGCACTACTTTGCTAAAGTTATTCGGGTTCCTCAATATCTACAGGAGGATCAGTTTCATAGGTTCAAGGAGCTTGCTTTGACCATTGTTTATATTGCTGGTGGTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAGACAGCTGTCATCAGATCAAAATATGTTCGAGTATTACTTAACCAAGATATGAGTTTCTTTGATACTTATGGGAATAATGGAGACATCGTGAGTCAAGTATTAAGTGATGTACTGCTTATTCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTTCATAGGCTTGCAGAGAATATCCAAGATGCATATGCCGAAGCAGCCAGCATCGCTGAACAGGCAGTTTCGTATATACGGACCTTGTCTGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGCCTTGGATTTACATATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATACATGGAAAAGCTCACGGTGGGGAAATTATAACAGCTCTGTTTGCTGTGATTTTAAGCGGCTTGGGATTAAACCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTTTTGATCACGACGGAAGTGCTCCTGTGTCTGTACAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACAGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGCAGAAATGGTTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAATTGGAATGGCTGAGGAGCCAAATAGGACTGGTCACCCAGGAACCTgctttgctcagtttgagtataAGAGACAATATTGCATATGGAAGGGATACCACAATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACCTTCATAAGTTCATTAGATAAAGGTTATGATACACAGATTGGCAGGGCTGGTTTAGCTTTGACAGAAGAACAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTTCTGAATCCATCCATTCTCCTGCTCGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCCCTGGATCTCCTTATGCTGGGGCGCTCGACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCACGATGAATTATTGACCCTGGGTGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCTACAAAACTTCCAAAGAGGATGCCTGCTCGCAACTACAAGAAGACTGCAGCTTTTCAAATTGAGAAAGATTCTTCAGAGAGTCATAGTTGCAAAGAACCATCATCCCCTAGAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTTACAAGATTCACCACAAGTGCAGAGCCCACCACCTGAGAAGATGATGGAGAATGGCCAGTCTTTGGACTCTACAGAGAAAGAGCCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGGTTACCCGAGTTACCTAAGATTGATGTTCAGTCAGTGCATCGACAAACATCAAATGGTTCTGATCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAAACATTTAGCAGACCAGATAGTTATTCTGATGAATTTTCAGTGAAAATGAACGAAACAAAGGATGCACGGCATCGGGATCAACCCTCATTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCCGCAATCTTTGGTGCGTTCAATCCCCTCCTAGCATATGTTATTGGCCTGGTGGTGACAACTTACTATAAAATCGATAAAACTCATCACTTGCGGGGGGAGATAGACAAGTGGTGCTTACTCATTGCCTGCATGGGTATTGTGACAGTTGTAGCCAACTTTTTACAGCATTTCTACTTTGGTATAATGGGGGAGAAAATGACCGAAAGAGTTCGGAGAATGATGTTCTCAGCCATGCTACGTAATGAAATTGGATGGTATGACGATGAGGAGAACAGTGCCGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTCAGCAACAGACTTTCCATATTTATACAGGACATTGCTGCAGTTATTGTTGCTTTTCTCATCGGTGTTTTGCTGCACTGGAGAATAGCTCTTGTGGCTTTAGCAACACTTCCGGTTCTCTGTGTTTCTGCTGTTGCCCAGAAATTGTGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACCGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACCGTTGTTGCATTTTGTGCTGGTAATAAGGTTATGGAACTCTACAGGCTGcagttaaataaaatatttacgcAGAGCTTTCTTCATGGATTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTCTGGTACACCGCAATatgtataaaaaacaaatatgtagCTGCACCTACTGCCCTCAAGGAGTACATCGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTCAAGCGACGTAAATCTCTCATTTCAGTGTTTGAAATTATAGACCGGGTGCCTAAAATTGATCCTGACGATAACTCTGCCTTAAAGCCACCTAATGTATATGGAAGCATTGAGTtgaaaaatgttgatttttgttATCCTACTCGGCCAGAAGTGCTGGTATTAAGCAATTTCAGTCTCAAAGTCAGCGGGGGCCAAACAATTGCTGTTGTGGGAGTTTCAGGGTCAGGGAAGAGCACTATAATATCTTTGATGGAGAGATATTACGATCCAGTTGCTGGCCAAGTTTTACTGGATGGGAGGGATTTAAAACTGTATAATCTGAAATGGCTTAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCAGTTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGACATAATGCCAGTGAAGCTGAAATGAAAGAGGCCGCGAGAATAGCTAATGCTCATCATTTCATTAGTAGCCTGCCTCATGGTTATGACACTCATGTTGGAATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCGATTGCTAGGGTAGTGCTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTCAGCAATTGAATCAGAGTCAAGCCGAGTAGTGCAAGAGGCTCTAGACACTCTAATAATGGGAAACAAGACCACTATTTTAATAGCTCACAGGGCTGCCATGATGAGGCATGTGGACAATATAGTCGTACTCAATGGAGGACGGATAGTGGAAGAGGGGACCCATGATTCATTGGTGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTGTTTAG 4197 0.4172 MMGSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYMDLGAETSASQQMEAEEEMEEMEDIEPPPASVPFSQLFACADRFDWFLMVVGSVAAAAHGTALVVYLHYFAKVIRVPQYLQEDQFHRFKELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLSAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFDHDGSAPVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQIGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEATKLPKRMPARNYKKTAAFQIEKDSSESHSCKEPSSPRMMKSPSLQRISAVFRPSDGFFNLQDSPQVQSPPPEKMMENGQSLDSTEKEPSIKRQDSFEMRLPELPKIDVQSVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSYSDEFSVKMNETKDARHRDQPSFWRLAELSFAEWLYAVLGSIGAAIFGAFNPLLAYVIGLVVTTYYKIDKTHHLRGEIDKWCLLIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEIGWYDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDIAAVIVAFLIGVLLHWRIALVALATLPVLCVSAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFTQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICIKNKYVAAPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERYYDPVAGQVLLDGRDLKLYNLKWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSAIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00103 1398 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1395 - -
Tsu01g00103 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1138 1385 IPR027417 -
Tsu01g00103 1398 CDD ABC_6TM_Pgp_ABCB1_D2_like 821 1132 - -
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 749 790 - -
Tsu01g00103 1398 Pfam ABC transporter 423 567 IPR003439 GO:0005524
Tsu01g00103 1398 Gene3D - 392 639 IPR027417 -
Tsu01g00103 1398 Pfam ABC transporter 1167 1315 IPR003439 GO:0005524
Tsu01g00103 1398 Gene3D - 1147 1386 IPR027417 -
Tsu01g00103 1398 Gene3D ABC transporter type 1, transmembrane domain 1098 1146 IPR036640 GO:0005524|GO:0016021
Tsu01g00103 1398 Gene3D ABC transporter type 1, transmembrane domain 767 991 IPR036640 GO:0005524|GO:0016021
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 725 741 - -
Tsu01g00103 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 402 637 IPR003439 GO:0005524
Tsu01g00103 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 826 1118 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00103 1398 SUPERFAMILY ABC transporter transmembrane region 813 1134 IPR036640 GO:0005524|GO:0016021
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 698 724 - -
Tsu01g00103 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1149 1386 IPR003439 GO:0005524
Tsu01g00103 1398 SMART AAA_5 429 608 IPR003593 -
Tsu01g00103 1398 SMART AAA_5 1176 1363 IPR003593 -
Tsu01g00103 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00103 1398 SUPERFAMILY ABC transporter transmembrane region 71 377 IPR036640 GO:0005524|GO:0016021
Tsu01g00103 1398 Pfam ABC transporter transmembrane region 86 352 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00103 1398 Pfam ABC transporter transmembrane region 830 1081 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00103 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 636 IPR027417 -
Tsu01g00103 1398 Coils Coil 248 268 - -
Tsu01g00103 1398 Gene3D ABC transporter type 1, transmembrane domain 70 648 IPR036640 GO:0005524|GO:0016021
Tsu01g00103 1398 Coils Coil 39 59 - -
Tsu01g00103 1398 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 377 - -
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 657 683 - -
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 698 790 - -
Tsu01g00103 1398 PANTHER ABC TRANSPORTER B FAMILY 19 1395 - -
Tsu01g00103 1398 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00103 Tsu-Chr1 798806 808145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00103 60 695 Calmodulin-binding Proteins AT2G36910 43.606 2.81e-162 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00103 K05658 - gmx:100799399 2526.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00103 01 798806 808145 Tsu01g00103 01 798806 808145 ECH