Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00089 ATGGCAAGGATCAAGGTTCATGAGTTGAGGCAGAAAACCAAAGCTGATCTTTTGGCTCAGCTTAAAGACCTCAAGGCTGAACTCGCTTTGCTCCGTGTTGCTAAGGTCACCGGTGGTGCACCTAACAAGCTCTCCAAGATTAAGGTGGTAAGGCTATCCATCGCTCAGGTTTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCATTAAGGGAAGTCTACAAGAACAAGAAGTATTTGCCTCTTGATCTTCGCCCAAAGAAAACCAGAGCCATCCGCAGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAAAgggagaagaagaaggagacATATTTCCCATTGAGGAAATATGCTATCAAAGCATAG 372 0.4382 MARIKVHELRQKTKADLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPLRKYAIKA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00089 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Tsu01g00089 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tsu01g00089 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tsu01g00089 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tsu01g00089 123 Gene3D - 78 123 - -
Tsu01g00089 123 Coils Coil 14 34 - -
Tsu01g00089 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Tsu01g00089 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Tsu01g00089 123 CDD Ribosomal_L29_HIP 8 64 - -
Tsu01g00089 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00089 Tsu-Chr1 703314 705599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00089 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 90.164 6.65e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00089 K02918 - sly:101256286 205.297