Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00088 atgcaGCCTTACGGAGATGTTGATTCCACTTTGAGGGCCATCGCCGGTCGTGCCGAGGGTTTCGGCCGCCACGCCATCGGTGGTCTCCACGGTGCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCCCTTCGTGAAGGGTGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCACCTTTCATCATACCTGAGTGTGTCCTCTAATAAGACAGTTGATGGAAGAGGCCAGAGGGTTAAACTGACTGGGAAAGGCTTAAGGCTGAAAGAATGTGAGAACATAATTATATGCAACCTTGAGTTTGAGGGGGGCAGGGGTCATGATGTAGATGGGattcaaatcaaaccaaattctAGGAATATTTGGATAGACCGTTGCAGCCTCCGAGATTATGATGACGGCCTTATAGACATCACAAGACAAAGCACGGATATCACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCTACACACGTTGGTGATAGATGCATCCGGGTGACAATTCATCATTGTTTCTTTGATGGAACGAACCAGAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGACAGTATATGCAATTTGTGCCAGTGTCGAGTCCCAGATATATTCCCAATGTAACATATATGAAGCCGGAGATAAGAAAAAGGCTTATGAATTTTATACTGAGAAGGCGGCAGACAAAGAAGAGCCGAAGTCTGGCATCATAATATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCTGCTTGCCAACAGAATGTAAAGAATCAGTTTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTCAGAGAAGTTATCCAGTTATGTACAGGTTGGCAGTCTCTTTGCAGGCCAAAAGACAATTTGGTAATGAACTAG 990 0.4404 MQPYGDVDSTLRAIAGRAEGFGRHAIGGLHGALYLVTSLSDDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSNKTVDGRGQRVKLTGKGLRLKECENIIICNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRQPRVRFGKVHLYNNYTRNWTVYAICASVESQIYSQCNIYEAGDKKKAYEFYTEKAADKEEPKSGIIISEGDMLLNGAQPCCLPTECKESVFHPSEYYPTWTMEAATHSLREVIQLCTGWQSLCRPKDNLVMN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00088 329 Pfam Pectate lyase 72 235 IPR002022 -
Tsu01g00088 329 PRINTS Pollen allergen Amb family signature 197 216 IPR018082 -
Tsu01g00088 329 PRINTS Pollen allergen Amb family signature 219 238 IPR018082 -
Tsu01g00088 329 PRINTS Pollen allergen Amb family signature 17 34 IPR018082 -
Tsu01g00088 329 SMART amb_all 64 242 IPR002022 -
Tsu01g00088 329 Gene3D - 4 313 IPR012334 -
Tsu01g00088 329 SUPERFAMILY Pectin lyase-like 15 277 IPR011050 -
Tsu01g00088 329 PANTHER PECTATE LYASE 18-RELATED 2 323 IPR045032 GO:0030570
Tsu01g00088 329 PANTHER PECTATE LYASE 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00088 Tsu-Chr1 699797 702279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00088 41 327 Polysaccharide Lyase AT3G55140 78.746 2.56e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00088 K01728 - gmx:100802068 605.52