Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00086 atgatTTCAGACACCGACTGTGAGGAACATTCCACCGTGGCCACTACCGCCGGCGGAGAAAAAACCTCCGATAAAGATAACGCCGCACCGCCGGCAGCTCAAAATATTGTGATGTCTTCCAGAGATAACGATCCTCTCTTCAGCGGTGGTGGCATCAGCTTTCTATCTGGAAGTCGAAATGGAAGGATCAGCTATGGTTATTCCAGTATCAAGGGTAAAAGATCTTCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGATGGTTGccttttttggtgtttttgatGGCCATGGAGGATCACGGACTGCAGAATAcctgaaaaataatttattcaagaACTTGAGTAGCCATCCCGACTTTATCAAAGACACAAAGACAGCTATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCATAGGGATGCTGGGTCTACTGCAACAACAGCTTTGTTGTTGGGCGACCGAATTCTTGTTGCAAATGTCGGTGATTCTCGAGTAGTTGCATCTAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAGGCTGGGGGATTTGTTATCTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGACAAGCTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAAATTGAAGGCGTGGATTTCATAATAGTTGCAAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTTTGGTACAAAATATCATTGATGCAGAAGCAGCATCTAAAGAACTTATTAAAGAAGCTTATACTCGAGGAAGCTCAGACAACATCACTTGTGTTGTTGTTCGATTTGATCCATCTTGA 939 0.4196 MISDTDCEEHSTVATTAGGEKTSDKDNAAPPAAQNIVMSSRDNDPLFSGGGISFLSGSRNGRISYGYSSIKGKRSSMEDFFETKISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHHRDAGSTATTALLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPDRSDERQRIEQAGGFVIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIEGVDFIIVASDGLWNVISNKEAVSLVQNIIDAEAASKELIKEAYTRGSSDNITCVVVRFDPS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00086 312 PANTHER ALPHABET, ISOFORM E-RELATED 30 311 - -
Tsu01g00086 312 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g00086 312 CDD PP2Cc 63 309 IPR001932 -
Tsu01g00086 312 ProSiteProfiles PPM-type phosphatase domain profile. 64 309 IPR001932 -
Tsu01g00086 312 SUPERFAMILY PP2C-like 57 310 IPR036457 -
Tsu01g00086 312 Pfam Protein phosphatase 2C 65 302 IPR001932 -
Tsu01g00086 312 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 30 311 - -
Tsu01g00086 312 Gene3D - 57 312 IPR036457 -
Tsu01g00086 312 SMART PP2C_4 53 307 IPR001932 -
Tsu01g00086 312 ProSitePatterns PPM-type phosphatase domain signature. 95 103 IPR000222 GO:0043169
Tsu01g00086 312 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00086 Tsu-Chr1 672412 676167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00086 36 312 PP2C-type Phosphatase Gene Family AT1G43900 73.646 1.14e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00086 K17506 - gmx:100776867 523.087