Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00076 ATGTCAAATCGCATTGTAGCGGAGGTGGTTACTGATTCTTATTATGACTATCTAGAAATGGACAACCTCGGTCGCAGCCGTGGTGCTGCCGGTGAGATGCCGACTCTCGGACAGCTTCTCAAACATGTTGGTGATGTAAGGAAGGAAGTTACTGGTGATGGCAGTGAGACACCAGTACATCATACTCTTGATATTGCTGCTGGAATAGAGCCTCGGCCTGTTCCATTTGTTCTTTCGTTCAACAACCTTACCTATAGTGTTAAGGTAAAAAGCAAAACGAACATATTTAACCGGAACCGTGGTTCTCCGGTGAATATGGCTATGACACCGGCTGTTGGAGAGACGGCGTTCTCAAAGAGTAAGACTCTTTTGAATGATATATCTGGTGAAGCACGTGACGGTGAGATCATGGCGTTTCTTGGAGCTAGTGGCTCTGGAAAATCAACTCTGATTGACGCACTGGCTAACAGAATTGCGAAAGGAAAGTTGAAAGGAACCGTGAAACTGAATGGCGAATCGGTGGAGTCTAGTCTTCTCAAGGTAATTTCAGCCTATGTGATGCAAGATGATCTCCTCTTTCCAATGCTTACAGTGGAAGAAACTCTCACCTTTGCTGCTGAGTTTCGATTACCACGATCACTctcaaaatcaaagaaaaatgcaAGAGTTCAAGCCTTAATTGATCAATTAGGACTCCGCAACGCTGCCAAAACAGTCATTGGAGATGAAGGCCACCGTGGAGTCTCTGGTGGAGAAAGGCGTCGAGTCTCAATTGGAATCGACATAATCCACGATCCAATAGTACTTTTCCTTGATGAACCAACCTCGGGACTCGATTCCACAAGCGCATTCATGGTTGTGAAAGTGCTTCAGAGAATTGCACAAAGTGGAAGCATAGTTATCATGTCAATTCATCAACCAAGTTACAGAATCTTAGGTATTCTAGATCGAATGATCTTCTTATCGCGCGGCCAAATAGTTTACAGCGGTTCACCATCGCAGTTACCTTCATACTTCTCAGAATTCGGCCATCCTATACCAGAAGGTGATAACCGAACAGAATTCGCATTAGACCTGATTCGTGAGCTAGAAGGTTCACCAGGAGGAACAAAAAGCTTAGTTGAATTCAACAAATCATGGCAAAGTATGACAAAGCTTCACAGTTCTGATGCAGCACACAATACAACGAATTCACTATCATTGAAAGAAGCAATCAGCGCAAGCATTTCGCGAGGAAAATTAGTTTCAGGCGCTACAGCTGCAACaaattcaaatccaaatccaaacgCGACACCATCTTCTTTATCCTCGATGGTGCCTGCGTATGCAAATCCGTTTTGGATTGAGTTATTAACGCTTTCAAAGCGTTCAATAACCAATTCAAGACGAATGCCTGAACTATTTGGGATAAGATTAGGTGCTGTTATGGTGACTGGTTTCATACTTGCAACAATGTTTTGGCAACTTGACAACACACCAAAAGGAGTTCAAGAAAGGCTTGGATTCTTTGCTTTTGCTATGTCAACTACTTTCTACACAACAGCAGATGCATTACCAGTATTCATTCAAGAACGGTACATTTTCCTGAGAGAAACCTCTCACAATGCTTATAGAAGATGGTCTTATGTTATTTCACATGCTATTGTTGCTTTGCCTGCATTGTTATTTCTGTCTCTAGCTTTTGCCTGTATAACCTTTTGGGCCGTTGGGCTTGACGGTGGATTCTCGggctttttgttttattttgttataatttttgcGTCGTTTTGGGCCGGGAATTCGTTTGTGTCTTTTCTATCAGGCGTGGTACCTCATGTGATGTTGGGGTATACAATAGTAGTTGCAATTCTTGCATATTTCTTGCTATTTAGTGGGTTCTTTATTAATAGGGATAGGATCCCTAAGTATTGGATATGGTTCCATTACTTGTCTTTGGTTAAGTATCCTTATGAGGCTGTTTTGCAAAATGAGTTTAGTGATGCAGCTAAATGTTTTGTGAGGGGGGTGCAGATATTTGATAACTCACCACTTGCTTCTGTTCCTGATGCACTTAAGTTGAAGTTATTGGATAGCATGAGTAAAACTTTGGGAACCAAAATCACAGCTTCTACTTGTTTAACAACTGGTGTTGATTTGTTGAAGCAAAATGGGGTGATGGATTTGAGTAAATGGAATTTGGTATGGATAACTGTGGCTTGGGGCTTCTTCTTCAGAATTCTATTCTACTTGGCTTTGTTGGTGGGTAGCAAGAACAAGAGGAGTTGA 2265 0.4097 MSNRIVAEVVTDSYYDYLEMDNLGRSRGAAGEMPTLGQLLKHVGDVRKEVTGDGSETPVHHTLDIAAGIEPRPVPFVLSFNNLTYSVKVKSKTNIFNRNRGSPVNMAMTPAVGETAFSKSKTLLNDISGEARDGEIMAFLGASGSGKSTLIDALANRIAKGKLKGTVKLNGESVESSLLKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKNARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGILDRMIFLSRGQIVYSGSPSQLPSYFSEFGHPIPEGDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHSSDAAHNTTNSLSLKEAISASISRGKLVSGATAATNSNPNPNATPSSLSSMVPAYANPFWIELLTLSKRSITNSRRMPELFGIRLGAVMVTGFILATMFWQLDNTPKGVQERLGFFAFAMSTTFYTTADALPVFIQERYIFLRETSHNAYRRWSYVISHAIVALPALLFLSLAFACITFWAVGLDGGFSGFLFYFVIIFASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPKYWIWFHYLSLVKYPYEAVLQNEFSDAAKCFVRGVQIFDNSPLASVPDALKLKLLDSMSKTLGTKITASTCLTTGVDLLKQNGVMDLSKWNLVWITVAWGFFFRILFYLALLVGSKNKRS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00076 754 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 747 - -
Tsu01g00076 754 Pfam ABC transporter 124 276 IPR003439 GO:0005524
Tsu01g00076 754 ProSitePatterns ABC transporters family signature. 248 262 IPR017871 GO:0005524
Tsu01g00076 754 SMART AAA_5 133 325 IPR003593 -
Tsu01g00076 754 Pfam ABC-2 type transporter 305 363 IPR043926 GO:0140359
Tsu01g00076 754 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 35 747 - -
Tsu01g00076 754 Pfam ABC-2 type transporter 450 658 IPR013525 GO:0016020|GO:0140359
Tsu01g00076 754 Gene3D - 114 341 IPR027417 -
Tsu01g00076 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 342 IPR027417 -
Tsu01g00076 754 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 348 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00076 Tsu-Chr1 566325 569174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00076 123 335 Calmodulin-binding Proteins AT2G36910 28.636 1.70e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00076 K05681 - gmx:100803658 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00076 01 566325 569174 Tsu01g00076 01 566325 569174 ECH