Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00070 ATGAGAACAAGAAAATGCTTCGATACTGACTTCGAGACAACAGAGGGAGTAAAGACGATTACAACTTTCGAGGAGATGGGATTCAAACACGATTTACTCCGTGGAATCTACCAATTCGGTTTCGATAAACCATTGCCGATTCAACAGCGTGCCATTGCGCCTATCATTCAGGGTCGTGACGTCATTGCTCAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCCCTAACTGTTTGCCAGCTTGTCGATACCTCCGTCAGAGAGGTGCAGGCGTTAATTGTGTCTCCGACGAGGGAACTGGCCTCTCAAACTGAAAGAATTATATTGGCTATTGGCGATTATGTAAATATACAAGCACATGCTTGCATTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTCGAACACGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAGAGGAGAACATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATCAAATTTATGATGTGTATAGATATCTCCGGCCCGATCTTCAGGTTTGCTTGATTTCCGCTACGCTGCCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTGAGGATCCTTATAAAACGTGATGAATTGACGTTGGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTCTCTGTGATCTTTATGATAATGTTATCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGCAACAATAATTTCACCGTCTCGTCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTTGTTCTGGAACAACCCGAGTATTGATAACGACTGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTCTAGTTATTAATTACGACCTTCCAAATAATCGAGAGTTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGGCGAGAGGGTACTGCaataaattttgtgaaaaaggATGATATCAACATCCTGAGAGATCTTGAGCAATATTATGCCACTCAGATTGTTGATCTGCCAATGAATATCGCTGATCTTATATAA 1185 0.4169 MRTRKCFDTDFETTEGVKTITTFEEMGFKHDLLRGIYQFGFDKPLPIQQRAIAPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIILAIGDYVNIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTKAIKLLVLDESDEMLSRGFKDQIYDVYRYLRPDLQVCLISATLPHEILEMTNKFMTDPVRILIKRDELTLESIKQYFVAVEREEWKFDTLCDLYDNVIITQAVVFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMGEFCSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGREGTAINFVKKDDINILRDLEQYYATQIVDLPMNIADLI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00070 394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 222 IPR014001 -
Tsu01g00070 394 PANTHER BNAC03G41130D PROTEIN 11 387 - -
Tsu01g00070 394 Pfam DEAD/DEAH box helicase 46 208 IPR011545 GO:0003676|GO:0005524
Tsu01g00070 394 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 387 - -
Tsu01g00070 394 SMART helicmild6 274 355 IPR001650 -
Tsu01g00070 394 SMART ultradead3 40 237 IPR014001 -
Tsu01g00070 394 CDD SF2_C_DEAD 234 364 - -
Tsu01g00070 394 CDD DEADc_EIF4AIII_DDX48 23 223 - -
Tsu01g00070 394 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Tsu01g00070 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 377 IPR027417 -
Tsu01g00070 394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 394 IPR001650 -
Tsu01g00070 394 Gene3D - 226 394 IPR027417 -
Tsu01g00070 394 Pfam Helicase conserved C-terminal domain 247 355 IPR001650 -
Tsu01g00070 394 Gene3D - 6 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00070 Tsu-Chr1 519080 523360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00070 11 394 Eukaryotic Initiation Factors Gene Family AT3G19760 82.552 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00070 K13025 - gmx:100800020 701.049