Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00060 ATGGCATCATCTTCGGCAAGTTCTTCGGTTGTTGGGGTCATTGATGGGAAATTTGATAATGGTTATCTGGTTACTGTCACAATCGGTTCGGAGAAACTCAAAGGCATACTTTATCAAGCACCACAAAATGCCGTTTTGCCAACATCCCACCACAGTGCTTCTGCTAATAACAACAACGTGACTGCCTCGGTTGGTGTCCATCGTCGCCGACGCAGGAAGAAGTCAGAAATGAAAAAGAGAGATCCCGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTATTCTTTGCAGAACAACATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCTGAAAAAGCAGTTTATCAAGATAAAGCTGCGAAGGACAAGGAAAGGTACATAACAGAGATGAAATATTAtcgggagaagttgaaaaatgATCAGGTCATCAGTGACGCCGTGCCACTTCAACAGAGACTTCCTGAATGCTGA 525 0.4248 MASSSASSSVVGVIDGKFDNGYLVTVTIGSEKLKGILYQAPQNAVLPTSHHSASANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNLFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAAKDKERYITEMKYYREKLKNDQVISDAVPLQQRLPEC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00060 174 MobiDBLite consensus disorder prediction 63 92 - -
Tsu01g00060 174 CDD HMGB-UBF_HMG-box 85 149 - -
Tsu01g00060 174 Pfam HMG (high mobility group) box 85 152 IPR009071 -
Tsu01g00060 174 SMART hmgende2 84 153 IPR009071 -
Tsu01g00060 174 Gene3D High mobility group box domain 69 165 IPR036910 -
Tsu01g00060 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 85 152 IPR009071 -
Tsu01g00060 174 MobiDBLite consensus disorder prediction 65 79 - -
Tsu01g00060 174 PRINTS High mobility group (HMG1/HMG2) protein signature 136 156 - -
Tsu01g00060 174 PRINTS High mobility group (HMG1/HMG2) protein signature 117 136 - -
Tsu01g00060 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 173 - -
Tsu01g00060 174 SUPERFAMILY HMG-box 73 157 IPR036910 -
Tsu01g00060 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00060 Tsu-Chr1 455813 456719 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00060 1 173 ARID Transcription Factor Family AT1G04880 67.213 5.72e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu01g00060 HMG_box 3.6e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00060 - - gmx:100807028 259.225