Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00055 ATGGCATCAACATCGTGTGTTACTAAGAGTCCATTACCCATGAAAGAGACAGCTTTGAGCTGTGGAGTATATCCTCCTCCTATGGCAACATATGAAGAGGTTGTAGACAATCCAAAGCTCTTCATGCTTAGTTTGGAGAAGCTCCATGCTCTAATGTGCACCAAGTTCATGATTCCCATTATTGGTGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGATCATTAAAGAtagaaaatggaaagaaataactttagttttcaattttccATCAACGGCTACTAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACCCATCCAACTTCCGATGTTTTGCAGAGTCAATCATCCATCCCAGTTCCTGCTCCAAAGATGCAGATTTTGCATCCTTCACCCCAAATTCAACCAGCTGTCTTTCAACAGTTAAATGTCAATGCTGCTAGACTGCCTGAAGCAATGGCATCATCTTCGGCAAGTTCTTCGGTTGTTGGGGTCATTGATGGGAAATTTGATAATGGTTATCTGGTTACTGTCACAATCGGTTCGGAGAAACTCAAAGGCATACTTTATCAAGCACCACAAAATGCCGTTTTGCCAACATCCCACCACAGTGTTTCTGCTAATAACAACAACGTGACTGCCTCGGTTGGTGTCCATCGCCGCCGACGCAGGAAGAAGTCAGAAATGAAAAAGAGAGATCCCGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCTGAAAAAGCAGTTTATCAAGATAAAGCTGTGAAGGACAAAGAAAGGTACAGAACAGAGATGGAGTATTACCGGGAGAAGTTGAAGAATGATCAGGTCATCAGTGACGCTGTGCCACTTCAACAGAGACTTCCTGAACCAGATACGGACATGTTGAATGCTGATGTGGATTCTCTTCAAACCCCGGAGGAGAGCACTTCTGGTGGAAGTGATGATTATGAAGATGACAAGGCAATGGATAAAGATTATAGTATGGATACATTGCCTGTCTTAGGAGTTGGAGCTGAATGTATGGATTCAGTAGAGAAATCATCCAAGGAGGTTTATGACCTAGGTTCTTGGAAGAATATGGATGAGAGGAAAAGTGAAGTGGCACTAAAGTAG 1305 0.4161 MASTSCVTKSPLPMKETALSCGVYPPPMATYEEVVDNPKLFMLSLEKLHALMCTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKEITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTHPTSDVLQSQSSIPVPAPKMQILHPSPQIQPAVFQQLNVNAARLPEAMASSSASSSVVGVIDGKFDNGYLVTVTIGSEKLKGILYQAPQNAVLPTSHHSVSANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAVKDKERYRTEMEYYREKLKNDQVISDAVPLQQRLPEPDTDMLNADVDSLQTPEESTSGGSDDYEDDKAMDKDYSMDTLPVLGVGAECMDSVEKSSKEVYDLGSWKNMDERKSEVALK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00055 434 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Tsu01g00055 434 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Tsu01g00055 434 SUPERFAMILY HMG-box 253 337 IPR036910 -
Tsu01g00055 434 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Tsu01g00055 434 MobiDBLite consensus disorder prediction 243 272 - -
Tsu01g00055 434 Gene3D High mobility group box domain 249 345 IPR036910 -
Tsu01g00055 434 MobiDBLite consensus disorder prediction 350 388 - -
Tsu01g00055 434 Gene3D - 30 137 IPR036431 GO:0003677
Tsu01g00055 434 SMART ARID_2 32 122 - -
Tsu01g00055 434 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 393 - -
Tsu01g00055 434 SMART hmgende2 264 333 IPR009071 -
Tsu01g00055 434 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Tsu01g00055 434 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Tsu01g00055 434 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Tsu01g00055 434 SMART bright_3 36 127 IPR001606 GO:0003677
Tsu01g00055 434 CDD HMGB-UBF_HMG-box 265 329 - -
Tsu01g00055 434 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 393 - -
Tsu01g00055 434 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00055 Tsu-Chr1 431917 435950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00055 1 363 ARID Transcription Factor Family AT1G04880 60.160 4.13e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu01g00055 ARID 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00055 - - gmx:100807028 578.556