Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00054 ATGATCTATTCTATACAACAAACACTGTACCATGTTATCGTCAACTTAACAATTCAATGTTTCCTCTATATGCAGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTTGAGTCTTTATCCATACTTGAGAAGTTACACGCTAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTTGGTCAACCCAGCACATCACAGGAGAAGAAATTGTTTCTTGTTGACCTTGGTTTAGCAACAAAGTGGAAAGATTCCTCAAGTGGAAAGCATACTGAATACGATCAACGCCCTGACATGTTTagAGGGACTGTTCGATACGCTAGCGTTCATGCTCATTTGGGCAGAACTGCTAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTCCTTCACAGGGGCCGATTGCCATGGCAAGGTTTTCAGGGTGATGGCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTATGCTGCTTTTGCCCCGCACCTTTTAAGCAGTTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCTAACTACTCCAAGCTAATATCCTTGTTTGATGGTATGCTCGGACCTAATCCTGCATTACGACCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGGGTAGATTGAACGTTGATGCAGATGATGAACAGCCCAAAAAGAAGGTTCGTTCAGGGATTCCTGCTTCGCAGTGGATTTCAGTTTACAATGCTAGACAACCGATGAAACAAAGGTATCATTACAATGTGGCTGATGGAAGATTAGCACAACATATTGAGAGAGGGATTGCAGATGACCTTCTTATTAGCTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCTGGAACTAATTATACCGCTCAAGTTTACAAATTATCACCATTATTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGAGCCAACAATGGCAGCTCTGTTGTGGTGATGTCAAAAGGTTTGATTGCTAACGATGTTACCTTTTGCAATGTGGAATTGGCTTTGTTATTTTTCCTGGTTAATATGCGGTGCTATCCAAACATCCTGGAGAAGTTCTTCGGGATTTGTTGTCCTTTTGGGGACAAATAG 1239 0.4108 MIYSIQQTLYHVIVNLTIQCFLYMQVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTSQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSPEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVDADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADGRLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGLIANDVTFCNVELALLFFLVNMRCYPNILEKFFGICCPFGDK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00054 412 PANTHER CASEIN KINASE-RELATED 19 369 - -
Tsu01g00054 412 Pfam Protein kinase domain 23 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00054 412 SUPERFAMILY Protein kinase-like (PK-like) 23 227 IPR011009 -
Tsu01g00054 412 Gene3D Transferase(Phosphotransferase) domain 1 7 264 - -
Tsu01g00054 412 ProSiteProfiles Protein kinase domain profile. 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00054 412 PANTHER CASEIN KINASE I-LIKE PROTEIN 19 369 - -
Tsu01g00054 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Tsu01g00054 412 SMART serkin_6 3 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00054 Tsu-Chr1 416384 421701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00054 61 218 MAP Kinase Kinase Kinase AT5G50180 23.750 1.89e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Tsu01g00054 Pkinase 8.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00054 - - gmx:100819969 645.58