Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00050 ATGGCCATGGCGGAGGCAAACTGGTCTGAACTCCCTACGGAACTTCTCAATCTGATATCACAACGAATCAACAACGATCTCGATCTCATTCGCTTTCGATCGGTTTGTCACAACTGGCGCACCTCTTCCATCTCATATCACCATCATCATACCTTACCTTTTAATTTACCACATTTTATATCACACTATCCCCTTTGTTCCCTCTCTAAACACATCATCGTCCTCATCAAATCACCACAAAAACAAGACCAAGAAACTCTCCAACCCTGGTTGATCAAAATATCCAAAAACTCAAATGGCGAAACACAACTTGTTCACCCACTCCATGACAACCTTAACATTTATCGCTTTCCTTATGACCTCGACTTCAACAAACTCTCAGTCGTCCATTTAGGAAACCACTTCGTCATGCATGATTATCGAGAAGGTTCCACCAATATACAAAAGGCCGGCTTTGGAAAAAAGGTTGTTGCTGTAACATGCCATGGGAAAAAACCTCTAGCGCTCTTCACATTGAACTTTGAGGGCCATCCGGTACTATTCAATTGCCGCAAAGAGCGTTGGACGGTGATCACCTACATGTCAACGTTATTTCAAGACATCTGTGTGTTTAAAGAGCGGTTTTGTGCAGTCAATAAAATTGGTCTGACAGTTGCGTTTGGACCATACTATACTGACCTAGTGGCTGAGAATGTTGATGGAGGGTACATGAAATTCCTGGTAGAGAGTGAGGGTGAGTTGTTCCTCGTGGACATATATGACCGGCATTGTTTTGGGTTTCCCGGTGAAGATGGTTTAAGGCTTAATGTGTTTAGGCTCGATGAGAAGGAGAAGAGATGGGTTAAGGTGACGAATTTAGGGGATAGAGTTTTGTTCTTGGGGAATGGATGTTCGTTTTCTACTTCTGTTTCCAAAGGAGGGAATTGTGTCATCTTCATCGACGATGCCTTCCTCCCTTCTGACAACATGTATTGTGGAAGTTTTCATCTTTCTCATAACTTTCCCATCAAAACTCTCTGTCCAAACCTTAATCATTTTTTCAACATCTTTTATCTAAGGTTTTGGACATTGTTGCAAATAACAAGTTGTGTGGGTGGTAAGGTTATATATGGCGATGCAGGTGGACGTTCCGATGGTTTGTTGTGGTATAAAGATTCCGGAAGACACGCGAATGGTGAATTCTCAATGGCTGTTGTTCAAGCAAACAATTTGTTGGAGGATCATAGTCAAGTTGAATCAGGACCCATGAGCTTGTATGAAGGAAGTCCTCGAGGTACTTTTGTTGGTGTATATGATGGCCATGGAGGTCCAGAAACTGCCCGGTTTGTCAATCAACGCCTATTTAAACATATCAAGAAGTTCACTTCAGAAAATCAGGGAATGTCAGCAGATGTTATCACTAAAGCATTTTTGGCAACAGAAGAAGAATTTCTTGCTGTGGTAAAGAAGCAATGGCAACACAAACCACAGCTAGCGTCGGTTGGAGCTTGCTGTTTGGTAGGCATAATATATAACGGAGAGCTCTATACTGCAAATGCAGGAGACTCTCGAGCAGTGTTAGGTAGAATGGACGAGGCTACAAAAGAGATTAAAGCGGTTCAACTATCCTATGAGCACAATGCTAGCCGAGAATCTGTCAGAGAGGAGCTACGCTCATTGCATCCTGATGATCCACAGATCGTACTGATGAAGCACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCATTGGCGACGCTTATCTAAAGAAGAAAGAGTTTAACCAACCACCACTGTTGGCAAAAAAAGCCTCTTCTGATCTGCTATACTCGATGTTCACTGCAATGTGTATTATGCAGGGAGTAGCGATGAAACTGATAAAAACAGCACTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAAAAAGATTGATCGTGGAATACGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTGGATTCATATAATCCACGTGCTCCCATTGTTTCAATTAAAGGAGGTGGTGATTTTGGTCTCGCTTGTTCTCAGTCTCAACAAGGCCACAGTTTTTGGGTGCAAGAAGTTCTTCCACCACCCCTTACTTCAACTTCACCCCCACCTTCCTTATTTGATGGAACTACCAgGTTGTATATCTCCTACAAATGCCTCTATGCTCAGCGTGTATGGATCGCCCGTAACTCTAagGGATTGCAGGACAAGATAGAGTTGGTTCCAATTGATCTACAAGACAGGCCTTCCTGGGATAAGGACAAAGTCTACCCAGCAAACAAGGTTCCATCTCTGGAACACAACAATGAAGTTAGAGGAGAGAGGCCCTTACTTTGCCCTAATGATCCTGATGATAAGGAGTTTGCTGAAGAGTTGCTATCTTACACGGATACATTCTACAAGACCATAGTTTCTTCATTTAAAGGAGGAGATGTGACTGCGGCTGGCACTGCATTTGATTACCTTGAGACTGTTCTCTCCAAATATGATAATGGACCTTTCTTTCTCGGCCAATTCAGTCTGGTGGATATAGCATATGCTCCTTTCATAGAAAGATTTCACAATATGGGAATACtTAGTTTCCAGAACCTTGGGTATGACCTTGGAATAAACAACATTGAAGGCTACAAAATAACCCGTTCTGATCCCAAGGAGCTTGTTGAAAGTTACAAGAAGCACTTCCTGGCCAATCCATGA 2718 0.4253 MAMAEANWSELPTELLNLISQRINNDLDLIRFRSVCHNWRTSSISYHHHHTLPFNLPHFISHYPLCSLSKHIIVLIKSPQKQDQETLQPWLIKISKNSNGETQLVHPLHDNLNIYRFPYDLDFNKLSVVHLGNHFVMHDYREGSTNIQKAGFGKKVVAVTCHGKKPLALFTLNFEGHPVLFNCRKERWTVITYMSTLFQDICVFKERFCAVNKIGLTVAFGPYYTDLVAENVDGGYMKFLVESEGELFLVDIYDRHCFGFPGEDGLRLNVFRLDEKEKRWVKVTNLGDRVLFLGNGCSFSTSVSKGGNCVIFIDDAFLPSDNMYCGSFHLSHNFPIKTLCPNLNHFFNIFYLRFWTLLQITSCVGGKVIYGDAGGRSDGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQVESGPMSLYEGSPRGTFVGVYDGHGGPETARFVNQRLFKHIKKFTSENQGMSADVITKAFLATEEEFLAVVKKQWQHKPQLASVGACCLVGIIYNGELYTANAGDSRAVLGRMDEATKEIKAVQLSYEHNASRESVREELRSLHPDDPQIVLMKHTVWRVKGLIQISRSIGDAYLKKKEFNQPPLLAKKASSDLLYSMFTAMCIMQGVAMKLIKTALCEAAKKREMRYSDLKKIDRGIRRHFHDDITVIVLYLDSYNPRAPIVSIKGGGDFGLACSQSQQGHSFWVQEVLPPPLTSTSPPPSLFDGTTRLYISYKCLYAQRVWIARNSKGLQDKIELVPIDLQDRPSWDKDKVYPANKVPSLEHNNEVRGERPLLCPNDPDDKEFAEELLSYTDTFYKTIVSSFKGGDVTAAGTAFDYLETVLSKYDNGPFFLGQFSLVDIAYAPFIERFHNMGILSFQNLGYDLGINNIEGYKITRSDPKELVESYKKHFLANP 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00050 905 ProSiteProfiles PPM-type phosphatase domain profile. 393 663 IPR001932 -
Tsu01g00050 905 SUPERFAMILY PP2C-like 405 665 IPR036457 -
Tsu01g00050 905 ProSitePatterns PPM-type phosphatase domain signature. 427 435 IPR000222 GO:0043169
Tsu01g00050 905 Pfam Protein of unknown function (DUF295) 281 315 IPR005174 -
Tsu01g00050 905 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 613 680 - -
Tsu01g00050 905 PANTHER ALPHABET, ISOFORM E-RELATED 371 597 - -
Tsu01g00050 905 SMART PP2C_4 385 661 IPR001932 -
Tsu01g00050 905 SUPERFAMILY Thioredoxin-like 710 782 IPR036249 -
Tsu01g00050 905 SUPERFAMILY GST C-terminal domain-like 783 900 IPR036282 -
Tsu01g00050 905 PANTHER ALPHABET, ISOFORM E-RELATED 613 680 - -
Tsu01g00050 905 Gene3D - 383 667 IPR036457 -
Tsu01g00050 905 Gene3D - 786 904 - -
Tsu01g00050 905 Gene3D - 7 47 - -
Tsu01g00050 905 SMART fbox_2 11 51 IPR001810 GO:0005515
Tsu01g00050 905 Pfam Glutathione S-transferase, N-terminal domain 720 778 IPR004045 -
Tsu01g00050 905 Pfam Protein phosphatase 2C 420 591 IPR001932 -
Tsu01g00050 905 Gene3D Glutaredoxin 693 785 - -
Tsu01g00050 905 CDD PP2Cc 394 663 IPR001932 -
Tsu01g00050 905 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 371 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00050 Tsu-Chr1 390897 402865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00050 372 682 PP2C-type Phosphatase Gene Family AT3G12620 64.689 1.66e-152 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00050 K01102 - gmx:100785413 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00050 01 390897 402865 Tsu01g00050 01 390897 402865 ECH