Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00025 ATGGCTTACGACAGCGCCACCATCAAGCTTAGAAGCGGAGAAAGCCATAGAAATTTTCCATGGAATGACCAAACTGTTCAAGAACCTTTGTTTCAAAGTGATTatagcatggaaacaattttgaGCATGATTAGAAATGGAACCTACCAATCTAAATTTGCCACGTTTCTTAGGAACCAAAGCCAAAGTGGCATTGTTGGGGTGAAGAAGGGTGGTAGGGAACAATTTTCTTGCACACAACTTTTTCAAAAAGAATTAACACCTAGTGATGTTGGTAAACTAAACAGGCTTGTCATACCCAAAAAACATGCAGTTACCTATTTTCCTTTGGTTTGTGACAACAATATAACTGCGAACGAAGATAAGTGCAGCGATGTGGAGGTTGTGTTTTATGACAAACTCATGCGATTGTGGAGGTTTCGATATTGTTACTGGAAGAGTAGTCAAAGCTACGTCTTGACTAGAGGATGGAATCGATTCGTCAAGGATAAGAAACTAAAGGCCAAAGACAATATTGTGTTTTATATGTGTGAACCTATAAATTTCACAAAAGGGGGTGATCATGGACAATCGTTTTTATTGATTGatgtaatatataataatgttgGTCATAGAATAAAACACTCATTTGAAGATCATAACAAGGGAGAAGATGCCAAACAGGTTTTGGAAAAAAGGATAATTTCCAATGAAGACACTCAAGGTATAATAGATTTGAATGCATTTCATTCCACACATAATAATGCAGATAGAGGATTCAAGCTCTTTGGCGTAAGTATCAGCTGA 786 0.3575 MAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSDYSMETILSMIRNGTYQSKFATFLRNQSQSGIVGVKKGGREQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPLVCDNNITANEDKCSDVEVVFYDKLMRLWRFRYCYWKSSQSYVLTRGWNRFVKDKKLKAKDNIVFYMCEPINFTKGGDHGQSFLLIDVIYNNVGHRIKHSFEDHNKGEDAKQVLEKRIISNEDTQGIIDLNAFHSTHNNADRGFKLFGVSIS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00025 261 Pfam B3 DNA binding domain 82 176 IPR003340 GO:0003677
Tsu01g00025 261 Gene3D - 77 199 IPR015300 -
Tsu01g00025 261 CDD B3_DNA 81 176 IPR003340 GO:0003677
Tsu01g00025 261 SMART B3_2 82 187 IPR003340 GO:0003677
Tsu01g00025 261 ProSiteProfiles B3 DNA-binding domain profile. 82 201 IPR003340 GO:0003677
Tsu01g00025 261 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 260 IPR044800 GO:0003700
Tsu01g00025 261 SUPERFAMILY DNA-binding pseudobarrel domain 80 182 IPR015300 -
Tsu01g00025 261 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00025 Tsu-Chr1 203159 203944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00025 2 197 RAV Transcription Factor Family AT1G51120 58.685 2.78e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g00025 B3 8.8e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00025 K09287 - gmx:102660503 302.367