Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00012 ATGGCGGCATTCAATGTCACAGCACGGCCACTTTTCTCACCgTCAAATGTTGCAGATAGCAGCAGATGCATAAGAAGAATCAGAGCTCTGACCCCTAACCCTAGAAGTATCGCCGGCATCGGGTTTGGCCGTGAGAGAGGCGTGAAACTGCCACTACTACCACTGCAAAAAGAACAACTGAACAACAGTAGTATTGTTGGTGCGAATTCTGCTGCGAGAGTGAGAGTGAGGGCGAGCAGTGCGGAAGATGAAGTAACTGTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATAAGTATTGGAAATCCAGTTGGAAAGCTGGTGGGAAGGATTGTTATTGGACTCTTTGGTGACGATGTACCCCAAACTGCCGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGATTTGGCTACAAGTCTTCTGCCTTCCATCGTGTCATCAAGGAATTTATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGGACCGGAGGCAAAAGTATATATGGCCGAACTTTCAAAGATGAGAATTTTAAACTGTCTCATACTGGACCAGGAGTAGTTAGCATGGCAAATGCTGGTCCCAACACTAATGGGAGTCAGTTTTTCATATGCACTGTCAAgACCCAGTGGCTGGATAAGAAACATGTTGTGTTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATTGCAGGAGACAGATCGTGGCGATCGTCCCCGAAAGAAGGTGGTTATCAGTGAATGTGGTGAGCTTCCAATTGCTTga 783 0.4572 MAAFNVTARPLFSPSNVADSSRCIRRIRALTPNPRSIAGIGFGRERGVKLPLLPLQKEQLNNSSIVGANSAARVRVRASSAEDEVTVQSKVTHKVYFDISIGNPVGKLVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKSSAFHRVIKEFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTQWLDKKHVVFGQVLEGMDIVRLIELQETDRGDRPRKKVVISECGELPIA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00012 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 60 259 - -
Tsu01g00012 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 157 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 231 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 203 215 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 106 256 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 109 255 IPR002130 GO:0000413|GO:0003755
Tsu01g00012 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 60 259 - -
Tsu01g00012 260 SUPERFAMILY Cyclophilin-like 87 257 IPR029000 -
Tsu01g00012 260 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 140 157 IPR020892 GO:0003755|GO:0006457
Tsu01g00012 260 CDD cyclophilin_ABH_like 93 255 - -
Tsu01g00012 260 Gene3D - 79 259 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00012 Tsu-Chr1 68134 69735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00012 110 254 U-box Gene Family AT5G67530 49.315 2.22e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00012 K03768 - gmx:100777088 341.658