Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00008 ATGCTACTCTCGGACAAAGAATTTTCGACATCGTGTTGTTCAAGCAATGGATCCGTTGGAATCACTGAAGAAAGGATCAGATCGGTAGATCTAGAGATTTCAAATTCGCCGGAGCTGAAGGTAATCCAATTCTCAAGGTCGGTGAAGAGAAGGAGATCGGTAAGCAAGGAGAAGAAGCTTCTTAAAGAAGGTGAAGGTTGGGATACTCCTGATGTTGGCAATGAAGTTTACGTTCACTATACTGGAGCGTTGCTTGATGGTACTAAATTTGATTCTAGCAGATATAGGGGAACACCTTTCAACTTCAAGCTTGGACAAGATGAAGTTTTGATTGCTGGATTTGGACGTAAAGGTCATGCCGTGGGTGATATTCTTGGGGTCAGATTCAAGGTTGCGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCCAGATTTGATTCAGAGGAATGGGGTGATggtgaatatgaagctttaatggAAGATGATGGTGAGAGCTTCCATGGATGA 528 0.4186 MLLSDKEFSTSCCSSNGSVGITEERIRSVDLEISNSPELKVIQFSRSVKRRRSVSKEKKLLKEGEGWDTPDVGNEVYVHYTGALLDGTKFDSSRYRGTPFNFKLGQDEVLIAGFGRKGHAVGDILGVRFKVAKVSGVSLLALFKEKKEKPRFDSEEWGDGEYEALMEDDGESFHG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00008 175 Gene3D - 48 131 IPR046357 GO:0003755
Tsu01g00008 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 110 - -
Tsu01g00008 175 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 70 114 IPR001179 GO:0003755
Tsu01g00008 175 PANTHER PEPTIDYLPROLYL ISOMERASE 57 110 - -
Tsu01g00008 175 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 73 128 IPR001179 GO:0003755
Tsu01g00008 175 SUPERFAMILY FKBP-like 58 115 - -
Tsu01g00008 175 Pfam Ribosomal protein S12/S23 106 151 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00008 Tsu-Chr1 44021 48127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00008 100 151 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 84.615 1.55e-22 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00008 K09571 - gmx:100794411 95.1301