Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00004 ATGGACAAGTTGTGGAGCTTTTCATCAAGAACCAATAACGTTGTTGACACCGGAAGGCAACAATGGGAAGAAGAAAAGGATAATCTTCATGAGCAATTAGATGATTTGGTCCATCTCTCACAAATTTTGGAGGATGTGGATTGTTTTCTCGATAATGCAACGACTCACAGTTCTAGGGAAGAAATTCCAAATTGTGTCGTTGTGTTGCACAAATTGTTAGATTCTATGATGGATAAATATAATAGAGGGTGTAACGGAAGAAGAAGCAAGTTTGGAAAAGATCCAAATGATGACAAGTCATTTCTATATATGGTGGATCGCATCTTCAAGCTATCTACCACCTTGAATTTGAGTGATTTCTATTTAGACAAAACAACCTCTATCCTAGAAAGagttatgtttattttagagAATGACCTTTGTGCTCTTTTAGAAGACCACATATCCAAAAATTGCAGACCAACACCAACACCTAGGAAATCATCGTCCTTTGGTTCCCTTCAGCTTCAGTTTCAACTTCAAGATGAAAGGGAATCTCCAAAGCCCAACAACCTAGATGATGAGGATGACGAGGATGACGATTTATTGCCAATTTTCTCAACTGAAGACCTTTCCGTTCTACACAAGATTGTGACTGTCATGATCAATGTGGGATATCATACAGAGTGTTGCATGACCTTTACCAATTTCAGACGAATTGCTTTCAAAAATTTGTTGCAAAAATTGGGATTCACATGCATAAGGATGGATGAGGTTTATAAAATGCAATGGGAGTTGTTGGAAGGAGAAATTGCGACATGGAACAGAGTGTTACGGCATTGCACTTCCGTGCTCTTCAACGCAGAAAGAAAGTTATACAACTCAGTATTTTCAAATCAACTACATGTTTCTAGAGGCATATTTAGTGATCTTGCCCGAGCTGTCATCATTAACTTTCTAAATTTTGCACAAGCAGTTGTTTTAACCAAGCCATCACCagaaaaacttttcaaattcctTGATATGTATGAGACCTTAAGGGATGAAGTGGAGTCTGTCGTCGTACTCATTAATGATGACGGTTCAGAGAAGTGTGCCAAAGATTTGGGGTACGAACTAGCTGCCGCAAAGCATGGGATCATTGAGGCTATTGTGGCAATGTTTTATGATTTGGAAAACTCCATTAAGGGTGACAGTGAAAGGATTCCAGTCCCCTATGGCGCGGTTCATCCATTGACTCGTTATGTAATGAATTATCTTAAATATGCATGTGAATACAAAGCGACTTTAGAGCAAGTGTTTTGCCAATATTGTATGAATCATAATTAtcttactactactactactgaTCGTCATTATGTCAATAATAATAAGGGTACATCCACTACCACCATGAAGATTCAAAACGAAGAAAATAATACACCAGAAGATCAAGAATTAGATGAGACGCCAAAGAAATCACCTTTTGTTGTTCAATTGATGACAATTATGGACCTTTTAGATGTAAATACTGAAAGAAAGTCCAAGCTATATAGGGATACGGCTTTACGTTGTATTTTTCTAATGAACAATGGAAGATACATAGTACAAAAGATTAAAGGGTGTGTTGATCTTCACGAGTTCATGGGTGACAATTGGTGTAGGAGGATGCAATCAAGTTTGAGGTTGCACCATAAGAGTTATCAGAGAGAGACTTGGACCAAGGTGGTACAATGCCTCAACCCGGATGGTTTGCAACAACAGGGGAACAAAGTGTCTAAGCAAATTTTGAGAGAGAGATTTAAGTGCTTTAATTCCATGTTTGAAGAGATCCACAAAACACAAAGCAGTTGGATCGTAAGCGATGAACAACTTCAATCAGAGTTAAGAGTTTCAATATGTTCTTTGGTCATACCTGCGTATCGCTCTTTTATGGGAAGATTCAAACATCATCTAGAATCAGGAAAACATGTTGACAAGTATATCAAGTATCATCCCGACGACCTTGAGACTTTGATTGACGatttttttgttggaaatgCTACGTCCATGCCTCGAAGGAGAACATGA 2028 0.3708 MDKLWSFSSRTNNVVDTGRQQWEEEKDNLHEQLDDLVHLSQILEDVDCFLDNATTHSSREEIPNCVVVLHKLLDSMMDKYNRGCNGRRSKFGKDPNDDKSFLYMVDRIFKLSTTLNLSDFYLDKTTSILERVMFILENDLCALLEDHISKNCRPTPTPRKSSSFGSLQLQFQLQDERESPKPNNLDDEDDEDDDLLPIFSTEDLSVLHKIVTVMINVGYHTECCMTFTNFRRIAFKNLLQKLGFTCIRMDEVYKMQWELLEGEIATWNRVLRHCTSVLFNAERKLYNSVFSNQLHVSRGIFSDLARAVIINFLNFAQAVVLTKPSPEKLFKFLDMYETLRDEVESVVVLINDDGSEKCAKDLGYELAAAKHGIIEAIVAMFYDLENSIKGDSERIPVPYGAVHPLTRYVMNYLKYACEYKATLEQVFCQYCMNHNYLTTTTTDRHYVNNNKGTSTTTMKIQNEENNTPEDQELDETPKKSPFVVQLMTIMDLLDVNTERKSKLYRDTALRCIFLMNNGRYIVQKIKGCVDLHEFMGDNWCRRMQSSLRLHHKSYQRETWTKVVQCLNPDGLQQQGNKVSKQILRERFKCFNSMFEEIHKTQSSWIVSDEQLQSELRVSICSLVIPAYRSFMGRFKHHLESGKHVDKYIKYHPDDLETLIDDFFVGNATSMPRRRT 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00004 675 PANTHER EXOCYST COMPLEX PROTEIN EXO70 26 666 IPR004140 GO:0000145|GO:0006887
Tsu01g00004 675 SUPERFAMILY Cullin repeat-like 92 663 IPR016159 -
Tsu01g00004 675 Coils Coil 19 39 - -
Tsu01g00004 675 Gene3D Exocyst complex component Exo70 86 673 - -
Tsu01g00004 675 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 26 666 - -
Tsu01g00004 675 MobiDBLite consensus disorder prediction 453 476 - -
Tsu01g00004 675 Pfam Exo70 exocyst complex subunit 266 661 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00004 Tsu-Chr1 26577 28604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00004 42 674 EXO70 exocyst subunit family AT5G13150 44.901 1.15e-178 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00004 K07195 - mtr:MTR_1g117090 1070.84