Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05379 ATGGACAACGAGGCGGTAGAATTTGATATTGGGTTGGGAGGAGAATACGAGGAGGAGCCTATTGAGATCGAGGAGGAGGATGATGAAGACGAAGAAGAAGAGGAAGATGATGAATTGGATTTGGGAGAAAGCAGCGGTGCAGTGTATTTTCCAGAGGCGGGGGATCTGGAACCTTCGGAGGGTATGGAATTCGAGTCTGAAGAGGCTGCAAAGGCTTTCTATAATTCGTATGCTCGTCGTGTTGGGTTTAGTACTCGTGTGAGCTCATCTCGTCGTTCACGTCGTGACGGAGCCATCATTCAGAGACAATTCGTATGTGCAAAGGAAGGATTTCGCAATTTGAACGAGAAAAGGACGAAAGATAGAGAGATCAAAAGGCCAAGAACAGTTACTCGAGTGGGATGCAAAGCCTCTTTATCTGTTAAAATGCACGATTCTTCTGGAAAATGGATCGTATCAGGGTTCGTTAGAGAACACAATCACGAACTTGTTCCACCGGATCAGGTTCACTGCCTTCGTTCTCATAGGCAAATATCTGGATCTGCAAAGACACTTATAGACACTCTACAGGCTGCTGGTATGGGTCCTCGTAGAATTATGTCTGCACTCATCAAAGAGTATGGCGGTATTAGCAAAGTCGGCTTCACCGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCACAGAAGTTTGCAGGGTGACATTCAACTTGTTCTTGACTATTTGAGACAAATGCATGCTCAAAACCCTAATTTTTTCTTTGCTGTTCAAGGTGATCTTGATGATGAGGATCATTCCATCACCAATGTTTTCTGGGCTGACCCCAAGGCAAGGTTGAATTACACTTATTTCGGTGATACTGTCACTTTTGACACTACTTACCGCTCTAATAGGTATCGTTTACCCTTTGCTCCCTTTACTGGTGTTAACCATCATGGTCAGCCTGTTCTTTTTGGTTGCGCTTTTCTAATTAATGAATCCGAAGCTTCATTTGTCTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGCCCACCACTCTCAATAACTACCGACCATGATTCTGTTATTCAGTCTGCCATAGCGCAAGTGTTCCCCAACACTCGTCACCGTTTCTGCAAGTGGCACATCTTTAAGCAATGCCAGGAGAAGTTGTCTCACATTTTCCTCCAGTTTCCAAATTTTGAAGCCGAGTTTCACAAATGTGTTAACTTGACAGACTCAATTGACGAATTCGAGTCTTGCTGGTCCAAACTGGTAGATAGATATGATCTCAGGGAGAATGAATGGCTTCAAGCAATACATTCTGCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAACGAAGTGATAGCATGAACTCTTACTTTGATGGCTATGTGAATGCTTCAACCAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCGCTTGAAAGTCGCAACGAGAAAGAAGTAAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCCTCCCCGATGGAGAGGCAAGCATCTGAACTTTACACAAGAAAAATTTTCATGAGGTTCCAAGAGGAGCTAGTTGGCACACTAACATTCATGGCATCCAAAGCTGAGGATGATGGGGAGGTCATTACGTATAATGTAGCTAAGTTTGGAGAGGATCATAAAGGATTCAACGTTAGATTCAATGTTTTGGAAATGAAAGTGACTTGCAGTTGTCAGATGTTTGAGTTTTCAGGCCTTCTTTGCAGGCATATTCTGGCAGTCTTTAGAGTTACCAATGTCCTTACTCTCCCATCTCATTATATACTGAAACGCTGGACAAGAAATGCGAAGAGCAATGTCATTCTAGAAGAACATGCTTGTGATGTATATACTTACTATTTGGAATCTCACACAGTTAGATATAATACTCTCCGACATGAGGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTATGATGTTGCAAAGGATGCTTTACAAGAAGCTTCAAAAAGAGTTGCGCAGGTGATGCGAAAGGAGGGGAGAACTCCCATCAGCAATGGGAAGGCCAGGAGTCACTTGCTGAATGATGAAAATCGTGCTAATTACACTATTGGCTGCCAGGATGAAAGCTTGGGCGAGCATATGAATAAGGATGATATGGATAAGCATATTGCAAAACTTACAAATGAGCTTGAGTGTGCAAATCGGAAGTGTGAAGTTTACCGTTCCAACTTGCTCTCTGTTTTGAAAACTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAATATCAAGATAAGCATGAAAGATGGCCTTTGA 2355 0.4263 MDNEAVEFDIGLGGEYEEEPIEIEEEDDEDEEEEEDDELDLGESSGAVYFPEAGDLEPSEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHRSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDLDDEDHSITNVFWADPKARLNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPLSITTDHDSVIQSAIAQVFPNTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKCVNLTDSIDEFESCWSKLVDRYDLRENEWLQAIHSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFMRFQEELVGTLTFMASKAEDDGEVITYNVAKFGEDHKGFNVRFNVLEMKVTCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHACDVYTYYLESHTVRYNTLRHEAFKFVDKGASSPETYDVAKDALQEASKRVAQVMRKEGRTPISNGKARSHLLNDENRANYTIGCQDESLGEHMNKDDMDKHIAKLTNELECANRKCEVYRSNLLSVLKTVEDHKLELSVKVENIKISMKDGL 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05379 784 MobiDBLite consensus disorder prediction 1 42 - -
Trre9g05379 784 Coils Coil 668 688 - -
Trre9g05379 784 MobiDBLite consensus disorder prediction 1 63 - -
Trre9g05379 784 Pfam MULE transposase domain 289 381 IPR018289 -
Trre9g05379 784 Coils Coil 727 754 - -
Trre9g05379 784 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Trre9g05379 784 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 684 IPR031052 GO:0006355
Trre9g05379 784 Pfam FAR1 DNA-binding domain 73 165 IPR004330 -
Trre9g05379 784 Pfam SWIM zinc finger 557 603 IPR007527 GO:0008270
Trre9g05379 784 SMART 26again6 580 607 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05379 Trre-Chr9 58557941 58561117 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre9g05379 MULE 6.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05379 - - gmx:100793442 1345.49