Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05375 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAATACATCCAGGGCTTCACCCAGCCCGAGTCAGATCATTCTTCCAAGCGTAGCACCACTCGTTCTTCCGACTCAGATCACCACAACAACACCAACACCAACACCAAACAATCTCAAACCCAACCACCACCCTTCACCTTTAAGAACGAAAACATGCGCCGAGGCCCTGATAATCAGTCTTATTATGTCTTAGGTCACAAGACTCCCAATATTCGTGATCTCTACACTCTTGGCCGTAAACTTGGTCAAGGTCAATTTGGCACCACTTATTTAGCCACCGACAATTCAACCTCCATTGAATATGCTTGCAAATCTATTTCCAAGAGAAAGCTTATTTCCAAGGAGGATGTTGAGGATGTTAGGAGGGAAATTCAGATTATGCACCATTTGGCTGGTCACAAGAACATTGTCACCATCAAAGGTGCCTATGAGGATGCACTCTATGTCCATATTGTCATGGAGCTATGCTCTGGTGGTGAGTTGTTTGACCGCATCATCCAGAGAGGTCACTATACCGAAAGGAAGGCTGCTGAGTTGACCAAAATTATTGTTGGTGTTGTTGAAGCCTGTCATTCCCTTGGTGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGACGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCCGTTTTCTTCAAACCAGGTCAAGTTTTCACCGATGTAGTTGGCAGCCCGTACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGTCCTGAAGCAGATGTGTGGACGGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTGCCGCCGTTCTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGGAAAAGACCTTATTAGAAAGATGCTGTGTTCTCGGCCTTCAGATCGGTTGACTGCTCATCAAGTTTTGTGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCAGACAGAGCAATTGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTACGAGTAATTGCTGAAAGTCTTTCCGAGGAGGAAATTGCTGGTTTGAGAGAAATGTTCCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTAAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCCGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTGGAGCGTGAGGAACATCTTGTTGCAGCATTCCGATATTTTGACAAGGACGGAAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATCAGGGAAGTTGATCAAGATAACGATGGGAGGATTGATTATGGTGAATTTTCTGCCATGATGCAAAAAGGCAATGTTGGGATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTGAGCATGCGGGACGCACCAAGTGCTCAATAG 1650 0.4358 MGNTCRGSLKGKYIQGFTQPESDHSSKRSTTRSSDSDHHNNTNTNTKQSQTQPPPFTFKNENMRRGPDNQSYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLATDNSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDALYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSRPSDRLTAHQVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFSAMMQKGNVGIGRRTMRNSLNLSMRDAPSAQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05375 549 SMART serkin_6 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05375 549 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Trre9g05375 549 Gene3D Transferase(Phosphotransferase) domain 1 172 353 - -
Trre9g05375 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre9g05375 549 CDD STKc_CAMK 86 343 - -
Trre9g05375 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 518 - -
Trre9g05375 549 Gene3D - 354 526 - -
Trre9g05375 549 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Trre9g05375 549 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Trre9g05375 549 Gene3D Phosphorylase Kinase; domain 1 88 171 - -
Trre9g05375 549 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Trre9g05375 549 Pfam Protein kinase domain 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05375 549 SMART efh_1 463 491 IPR002048 GO:0005509
Trre9g05375 549 SMART efh_1 427 455 IPR002048 GO:0005509
Trre9g05375 549 SMART efh_1 497 525 IPR002048 GO:0005509
Trre9g05375 549 SMART efh_1 391 419 IPR002048 GO:0005509
Trre9g05375 549 SUPERFAMILY EF-hand 368 525 IPR011992 -
Trre9g05375 549 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Trre9g05375 549 MobiDBLite consensus disorder prediction 36 67 - -
Trre9g05375 549 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Trre9g05375 549 MobiDBLite consensus disorder prediction 1 72 - -
Trre9g05375 549 FunFam Calcium-dependent protein kinase 5 172 352 - -
Trre9g05375 549 Pfam EF-hand domain pair 462 523 IPR002048 GO:0005509
Trre9g05375 549 Pfam EF-hand domain pair 392 452 IPR002048 GO:0005509
Trre9g05375 549 FunFam Calcium-dependent protein kinase 1 88 171 - -
Trre9g05375 549 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05375 549 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Trre9g05375 549 ProSiteProfiles EF-hand calcium-binding domain profile. 498 528 IPR002048 GO:0005509
Trre9g05375 549 SUPERFAMILY Protein kinase-like (PK-like) 69 368 IPR011009 -
Trre9g05375 549 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Trre9g05375 549 FunFam Calcium-dependent protein kinase 1 352 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05375 Trre-Chr9 58531846 58537567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05375 1 545 EF-hand Containing Proteins AT2G17290 84.095 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g05375 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05375 K13412 - gmx:100778173 986.482