Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05373 ATGAAGGTGTTGCTGTTACTTTTTCTTCTAGTAACAGCAGCATCAGCAGATCTAGATTCTCAGCGAGCTGCATTGCTAGCTCTCCGTTCTTCCGTCGGCGGCCGTACCCTTTTTTGGAACGCTACCAATCAGACTCCTTGCAACTGGGCCGGCGTCCAATGCGACCACGACCGTGTCGTCGAGCTTCACCTTCCCGCCGTCGCTCTTTCCGGTCAAATACCCACCGGCATATTCTCCAATCTCACCCACCTCCGCACACTCAGTCTCCGTTTCAATGCTCTCACCGGTTCACTCCCTTCAGATCTCTCATCCTGCGTCAACCTCAGAAACCTTTACATCCAGCGAAACCTTCTCTCCGGCGAAATCCCTCACTTCCTCTTCAACTTACCTGAATTGGTTCGACTCAACATGGGTTTCAACAACTTCTCAGGTTCTATTTCAAACTCATTCAACAACTTCACAAGACTCAAAACCCTCTTCCTTGAAAACAACCAACTTTCAGGTCCCATCCCGGAGTTAGACCGACTCACCCTCGATCAGTTCAATGTCTCTAACAATCTCTTAAACGGCTCTGTTCCCACAAACCTCCGGACTTTCTCTCAAGATTCCTTCTTGGGAAATTCCCTCTGCGGCAAACCTCTTTCTCTCTGTCCCGGCGATACCAGAACCGATTCTTCTTCTCCCTTTACTGCCTCCCCGGGTAATAAAAACAGCAAGAAGAACAACTTGTCCGGCGGAGCCATTGCCGGAATTGTAATTGGATCTATAGCAGCTCTTCTTTTGCTCGTTTTCCTTTTGATCTTCCTGTGCAGGAACAAGAGCAACAAGAAGACTAGTGCTGTTGATGTTGCAGCCGTGAAACAACATCCAGAATCTGAAATAGTTTCTCATGACAAGTCTATTTCTGACTTGGAGAACGGCAATGGATACCCTGCTGCTGCTGCTGCGGCAGTTGCAGTCAACAAGGTTGAAGCAAATGGAAATGCTGCTGCTGCTGCTGGTGGAGCTAAGAAGTTGGTGTTTTTTGGGAATGCAGAGAGGGCTTTTGATCTGGAGGATTTATTGAGGGCATCGGCGGAGGTGTTGGGTAAAGGGACGTTTGGGACGGCGTATAAGGCAGTATTGGAGTCGGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTGACAATAACTGAGAAGGAGTTCAGGGAGAAGATTGAAGCAGTGGGAGCAGTAGATCATCAGAGTTTGGTACCTCTAAGGGCTTACTATTTTAGCAGGGATGAGAAGCTCCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCGCTGAATTGGGAAATGAGATCAGGCATTGCACTAGGAGCAGCCCGTGGCATTGAGTACCTTCATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAATATCCTCTTAACCAAGTCATACGATGCAAGAGTGTCTGATTTTGGGCTTGCACAGCTTGTTGGCCCCTCCTCTACCCCAAACCGTGTTGCCGGGTACCGTGCGCCAGAAGTAACTGATCCTCGCAAAGTGTCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTTCTAACTGGGAAGGCACCTACACATGCTCTTCTAAATGAAGAAGGTGTAGATCTCCCCAGATGGGTTCAGTCAGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATCTCGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCTGTTGATTGTGCAGCACAATACCCCGACAAGCGCCCTTCAATGTCTGATGTGGTACGGAGCATAGAAGAGTTACGTCGATCTAGCTTGAAAGAGGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1941 0.4786 MKVLLLLFLLVTAASADLDSQRAALLALRSSVGGRTLFWNATNQTPCNWAGVQCDHDRVVELHLPAVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLSSCVNLRNLYIQRNLLSGEIPHFLFNLPELVRLNMGFNNFSGSISNSFNNFTRLKTLFLENNQLSGPIPELDRLTLDQFNVSNNLLNGSVPTNLRTFSQDSFLGNSLCGKPLSLCPGDTRTDSSSPFTASPGNKNSKKNNLSGGAIAGIVIGSIAALLLLVFLLIFLCRNKSNKKTSAVDVAAVKQHPESEIVSHDKSISDLENGNGYPAAAAAAVAVNKVEANGNAAAAAGGAKKLVFFGNAERAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTITEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSDVVRSIEELRRSSLKEEQDQIQHDNNDIEL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05373 646 FunFam Probable inactive receptor kinase RLK902 18 174 - -
Trre9g05373 646 SUPERFAMILY Protein kinase-like (PK-like) 360 623 IPR011009 -
Trre9g05373 646 Gene3D Ribonuclease Inhibitor 131 217 IPR032675 -
Trre9g05373 646 FunFam Probable inactive receptor kinase At1g48480 431 634 - -
Trre9g05373 646 Gene3D Transferase(Phosphotransferase) domain 1 431 645 - -
Trre9g05373 646 Pfam Leucine rich repeat N-terminal domain 19 55 IPR013210 -
Trre9g05373 646 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Trre9g05373 646 Gene3D Ribonuclease Inhibitor 19 129 IPR032675 -
Trre9g05373 646 Pfam Leucine rich repeat 72 118 IPR001611 GO:0005515
Trre9g05373 646 Gene3D Phosphorylase Kinase; domain 1 323 430 - -
Trre9g05373 646 FunFam pollen receptor-like kinase 1 325 430 - -
Trre9g05373 646 ProSiteProfiles Protein kinase domain profile. 356 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05373 646 Pfam Protein kinase domain 359 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05373 646 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Trre9g05373 646 SUPERFAMILY L domain-like 38 199 - -
Trre9g05373 646 PANTHER OS05G0588300 PROTEIN 4 629 - -
Trre9g05373 646 CDD STKc_IRAK 362 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05373 Trre-Chr9 58523448 58525864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05373 15 626 Receptor kinase-like Gene Family AT1G48480 64.640 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g05373 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05373 - - gmx:100818955 979.163