Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05372 ATGCTGTCTCCGGCGACAATGAAGGTGTTGCTGTTACTTTTTCTTCTAGTAACAGCAGCATCAGCAGATCTAGATTCTCAGCGAGCTGCATTGCTAGCTCTCCGTTCTTCCGTCGGCGGCCGTACCCTTTTTTGGAACGCTACCAATCAGACTCCTTGCAACTGGGCCGGCGTCCAATGCGACCACGACCGTGTCGTCGAGCTTCACCTTCCCGCCGTCGCTCTTTCCGGTCAAATACCCACCGGCATATTCTCCAATCTCACCCACCTCCGCACACTCAGTCTCCGTTTCAATGCTCTCACCGGTTCACTCCCTTCAGATCTCTCATCCTGCGTCAACCTCAGAAACCTTTACATCCAGCGAAACCTTCTCTCCGGCGAAATCCCTCACTTCCTCTTCAACTTACCTGAATTGGTTCGACTCAACATGGGTTTCAACAACTTCTCAGGTTCTATTTCAAACTCATTCAACAACTTCACAAGACTCAAAACCCTCTTCCTTGAAAACAACCAACTTTCAGGTCCCATCCCGGAGTTAGACCGACTCACCCTCGATCAGTTCAATGTCTCTAACAATCTCTTAAACGGCTCTGTTCCCACAAACCTCCGGACTTTCTCTCAAGATTCCTTCTTGGGAAATTCCCTCTGCGGCAAACCTCTTTCTCTCTGTCCCGGCGATACCAGAACCGATTCTTCTTCTCCCTTTACTGCCTCCCCGGGTAATAAAAACAGCAAGAAGAACAACTTGTCCGGCGGAGCCATTGCCGGAATTGTAATTGGATCTATAGCAGCTCTTCTTTTGCTCGTTTTCCTTTTGATCTTCCTGTGCAGGAACAAGAGCAACAAGAAGACTAGTGCTGTTGATGTTGCAGCCGTGAAACAACATCCAGAATCTGAAATAGTTTCTCATGACAAGTCTATTTCTGACTTGGAGAACGGCAATGGATACCCTGCTGCTGCTGCTGCGGCAGTTGCAGTCAACAAGGTTGAAGCAAATGGAAATGCTGCTGCTGCTGCTGGTGGAGCTAAGAAGTTGGTGTTTTTTGGGAATGCAGAGAGGGCTTTTGATCTGGAGGATTTATTGAGGGCATCGGCGGAGGTGTTGGGTAAAGGGACGTTTGGGACGGCGTATAAGGCAGTATTGGAGTCGGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTGACAATAACTGAGAAGGAGTTCAGGGAGAAGATTGAAGCAGTGGGAGCAGTAGATCATCAGAGTTTGGTACCTCTAAGGGCTTACTATTTTAGCAGGGATGAGAAGCTCCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCGCTGAATTGGGAAATGAGATCAGGCATTGCACTAGGAGCAGCCCGTGGCATTGAGTACCTTCATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAATATCCTCTTAACCAAGTCATACGATGCAAGAGTGTCTGATTTTGGGCTTGCACAGCTTGTTGGCCCCTCCTCTACCCCAAACCGTGTTGCCGGGTACCGTGCGCCAGAAGTAACTGATCCTCGCAAAGTGTCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTTCTAACTGGGAAGGCACCTACACATGCTCTTCTAAATGAAGAAGGTGTAGATCTCCCCAGATGGGTTCAGTCAGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATCTCGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCTGTTGATTGTGCAGCACAATACCCCGACAAGCGCCCTTCAATGTCTGATGTGGTACGGAGCATAGAAGAGTTACGTCGATCTAGCTTGAAAGAGGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1959 0.4798 MLSPATMKVLLLLFLLVTAASADLDSQRAALLALRSSVGGRTLFWNATNQTPCNWAGVQCDHDRVVELHLPAVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLSSCVNLRNLYIQRNLLSGEIPHFLFNLPELVRLNMGFNNFSGSISNSFNNFTRLKTLFLENNQLSGPIPELDRLTLDQFNVSNNLLNGSVPTNLRTFSQDSFLGNSLCGKPLSLCPGDTRTDSSSPFTASPGNKNSKKNNLSGGAIAGIVIGSIAALLLLVFLLIFLCRNKSNKKTSAVDVAAVKQHPESEIVSHDKSISDLENGNGYPAAAAAAVAVNKVEANGNAAAAAGGAKKLVFFGNAERAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTITEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSDVVRSIEELRRSSLKEEQDQIQHDNNDIEL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05372 652 Gene3D Ribonuclease Inhibitor 137 223 IPR032675 -
Trre9g05372 652 Pfam Protein kinase domain 365 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05372 652 FunFam Probable inactive receptor kinase RLK902 24 180 - -
Trre9g05372 652 Gene3D Transferase(Phosphotransferase) domain 1 437 651 - -
Trre9g05372 652 PANTHER OS05G0588300 PROTEIN 10 635 - -
Trre9g05372 652 FunFam Probable inactive receptor kinase At1g48480 437 640 - -
Trre9g05372 652 SUPERFAMILY Protein kinase-like (PK-like) 366 629 IPR011009 -
Trre9g05372 652 FunFam pollen receptor-like kinase 1 331 436 - -
Trre9g05372 652 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Trre9g05372 652 Gene3D Phosphorylase Kinase; domain 1 329 436 - -
Trre9g05372 652 ProSiteProfiles Protein kinase domain profile. 362 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05372 652 SUPERFAMILY L domain-like 44 205 - -
Trre9g05372 652 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Trre9g05372 652 Pfam Leucine rich repeat 78 124 IPR001611 GO:0005515
Trre9g05372 652 CDD STKc_IRAK 368 631 - -
Trre9g05372 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Trre9g05372 652 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05372 Trre-Chr9 58523448 58525882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05372 21 632 Receptor kinase-like Gene Family AT1G48480 65.120 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g05372 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05372 - - gmx:100818955 979.163