Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05368 ATGATGGCGACGCAGACACAATATATGACTAATAATAATATTCCCATTGGAATGGGAGAGGGAGACCACTTTAATAATCATCATCATAATCAAATTGAATGCAATGTTCCAACAGATCATGATGATGATCAAGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGGCCTAGGGCTAATCCAGGTCCATCAACTTCTGTCAAAGAGAGATTAGTGGTAGCTGTTGGTTACTTGAAAGAGTACACAAAGAATTCCTCAAACAATGTTCTCATTCAGATATGGGTGCCAGCTCTAAGGAGGAGATCGCCTCTAATTCACAATCACTACTTGCATGAGTCCTCATCATCTGCTCCGGTTTCTGTTAATCCAAACACCAATGTTCACGTTCGTTTCTTCAGAAGCCATGAGTATCCGAGGCATCAGCAGCAGCAATATGGATCTCTTTTTGCACTTCCAGTCTTCGAAAGAGGAAGCGGAACATGCCTCGGTGTGATTGAGTTTGTTATCACCAACCAAACCGTTGTCAATTACCGTCCACAGCTTGATCATCTCTCCAATGCTCTTGAGGCTGTTGATTTTAGAAGTAGTCACAACATGACTATTCCATCGGCAGTAAAGGTATTTGAGGAGTTGTATGAAGCAGCAGTGAACGAGATCGTAGAGGTGTTGGCATCGGTGTGCAAGACACACAATTTGCCATTGGCACTCACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAGTTAGAGGAAAAGGAACCGCTGGTGCAGCAGGATGCGGTGTTTCAGTCGCAGTTCCAACCGATCAGATGAATAATAATCAGATGATGATGAATTGCGTTTCCACCGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTATTGGGATTCCAAGAAGTGTGCAGTGAGTATCACCTTTTCAACGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTCGCTATTGACATTACTGCCTTTAGCAAAGCCGAATACCCACTCGCTCACCACGCTAACATGTTTGGCTTGCACGCCGCGGTTGCAATTCCACTTAGGAGTGTCTACACCGGATCTGCTGCTGATTTTGTTTTGGAATTTTTCCTACCTAAAGATTGTCGCGTTCCCGAACAACAGAAACACATGCTCAACTCATTGTCCCTTGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATAATGAAAATTCTAATCACCATGATCATGACCAAGATCAATTCACCTTCCCAACAACAACAAATAATTACATGCCTTCTTCTGCTTCTGATGCTGCTACTGCTTCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGACACATCATCATCATGTTCTTGGATTGCACATATGATGGAGGCACAACACAAAGGAAAAGGTGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAACTGGGAGAGGGAGAGGGAGGGAAATTCTGTCTTTTCAGAATTCGGCCAAGTTCTGCAGCATGACCAGAACAGTAATTCAAGAGCAAGTGTTGAAGCTGGGGAAGAATCCGGTGGCTGCGGTGTTGGTGGTGGTCGCCGGTCGTCTTCTTCTTCCAGTGGGAGAAAGTCGGGCGACAAGCGAAGAACCAAGGCCGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTCGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCGAGGAAAATAAAGAAAGTGGGCCACTCTTTGAAGAAACTTCAACTGGTGATTGATTCCGTTCAAGGCGCAGAGGGCGCGATACAAATTGGCTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTTCTAATGGTGGTGGTGGTGGTGATCACAACAACAACGGCTTCTATAACAGCCATGGAGATGGAGTAGTTACTGGTTTGAAATCTCCACCCTCTGCTTGCAGTCAGACACATGCAGCAGCAGCAGCAGGAAACAAACTTATCACTGCTAGCACCATTAATGGAGAACATCATCATAATCATCATCATCATCATGTTATGATGACAGAAAACCCTTCAGCTCCTTCAGCAGCTGATGCATTAAATATGATGCATGCATCCAATATCAATATCCAAAACTATCAGCAGCTGCAAGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAATAATAACAATCAAACCCTACCTCCAAGGCCAACTGCAGGAGGAGCCTGGAACAACAATAATTCATCATCATCAGGACTACTGGAAAGAGGTGCTTTCAGAGTGAAGGCGACTTTTGCGGATGAAAAGATTCGTTTTAGTTTGCAAGCAATGTGGGGTTTCAGAGATTTGCAGCTTGAGATAGCAAGGCGTTTCAACCTAAATGATATGAACAACTTGGTTCTAAAGTATTTGGATGACGAAGGAGAATGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGATTTGCACACATCTTCTCACACACGTACAATCAGACTTTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCCGCAACAGCAGCAGCAGTCCATCCTCCTAG 2688 0.4394 MMATQTQYMTNNNIPIGMGEGDHFNNHHHNQIECNVPTDHDDDQESGFVVGKRWWIGPRANPGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSPLIHNHYLHESSSSAPVSVNPNTNVHVRFFRSHEYPRHQQQQYGSLFALPVFERGSGTCLGVIEFVITNQTVVNYRPQLDHLSNALEAVDFRSSHNMTIPSAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGVRGKGTAGAAGCGVSVAVPTDQMNNNQMMMNCVSTVDSACYVGDMEVLGFQEVCSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRVPEQQKHMLNSLSLVVQQACRSLHLHVVMDDNENSNHHDHDQDQFTFPTTTNNYMPSSASDAATASLSQVDATSGCSTKDTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWEREREGNSVFSEFGQVLQHDQNSNSRASVEAGEESGGCGVGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATSNGGGGGDHNNNGFYNSHGDGVVTGLKSPPSACSQTHAAAAAGNKLITASTINGEHHHNHHHHHVMMTENPSAPSAADALNMMHASNINIQNYQQLQEDQDTKQLLLHFNNNNNQTLPPRPTAGGAWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFRNSSSSPSS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05368 895 Pfam RWP-RK domain 568 615 IPR003035 -
Trre9g05368 895 Gene3D - 793 879 - -
Trre9g05368 895 MobiDBLite consensus disorder prediction 521 565 - -
Trre9g05368 895 Pfam PB1 domain 795 876 IPR000270 GO:0005515
Trre9g05368 895 SMART PB1_new 794 877 IPR000270 GO:0005515
Trre9g05368 895 CDD PB1_NLP 795 876 IPR034891 -
Trre9g05368 895 PANTHER PROTEIN NLP8 41 890 IPR045012 GO:0003700
Trre9g05368 895 ProSiteProfiles RWP-RK domain profile. 554 635 IPR003035 -
Trre9g05368 895 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Trre9g05368 895 SUPERFAMILY CAD & PB1 domains 783 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05368 Trre-Chr9 58463972 58467080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05368 51 894 NLP Transcription Factor Family AT4G35270 42.825 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre9g05368 PB1 3.5e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05368 - - tpra:123881749 1533.08