Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05367 ATGGAATATGGTGGCGGGCTAGTCGGAGACGGTGGTGTGTTTGGGAGCATGGTGGGAGGAGGAGGAGAAGCAGCAGCAGATATGATTGAGGAGCTTTTGGTAGATGGTTGTTGGATTGAAGCCAGTGAGAATAATAATATGATGGCGACGCAGACACAATATATGACTAATAATAATATTCCCATTGGAATGGGAGAGGGAGACCACTTTAATAATCATCATCATAATCAAATTGAATGCAATGTTCCAACAGATCATGATGATGATCAAGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGGCCTAGGGCTAATCCAGGTCCATCAACTTCTGTCAAAGAGAGATTAGTGGTAGCTGTTGGTTACTTGAAAGAGTACACAAAGAATTCCTCAAACAATGTTCTCATTCAGATATGGGTGCCAGCTCTAAGGAGGAGATCGCCTCTAATTCACAATCACTACTTGCATGAGTCCTCATCATCTGCTCCGGTTTCTGTTAATCCAAACACCAATGTTCACGTTCGTTTCTTCAGAAGCCATGAGTATCCGAGGCATCAGCAGCAGCAATATGGATCTCTTTTTGCACTTCCAGTCTTCGAAAGAGGAAGCGGAACATGCCTCGGTGTGATTGAGTTTGTTATCACCAACCAAACCGTTGTCAATTACCGTCCACAGCTTGATCATCTCTCCAATGCTCTTGAGGCTGTTGATTTTAGAAGTAGTCACAACATGACTATTCCATCGGCAGTAAAGGTATTTGAGGAGTTGTATGAAGCAGCAGTGAACGAGATCGTAGAGGTGTTGGCATCGGTGTGCAAGACACACAATTTGCCATTGGCACTCACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAGTTAGAGGAAAAGGAACCGCTGGTGCAGCAGGATGCGGTGTTTCAGTCGCAGTTCCAACCGATCAGATGAATAATAATCAGATGATGATGAATTGCGTTTCCACCGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTATTGGGATTCCAAGAAGTGTGCAGTGAGTATCACCTTTTCAACGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTCGCTATTGACATTACTGCCTTTAGCAAAGCCGAATACCCACTCGCTCACCACGCTAACATGTTTGGCTTGCACGCCGCGGTTGCAATTCCACTTAGGAGTGTCTACACCGGATCTGCTGCTGATTTTGTTTTGGAATTTTTCCTACCTAAAGATTGTCGCGTTCCCGAACAACAGAAACACATGCTCAACTCATTGTCCCTTGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATAATGAAAATTCTAATCACCATGATCATGACCAAGATCAATTCACCTTCCCAACAACAACAAATAATTACATGCCTTCTTCTGCTTCTGATGCTGCTACTGCTTCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGACACATCATCATCATGTTCTTGGATTGCACATATGATGGAGGCACAACACAAAGGAAAAGGTGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAACTGGGAGAGGGAGAGGGAGGGAAATTCTGTCTTTTCAGAATTCGGCCAAGTTCTGCAGCATGACCAGAACAGTAATTCAAGAGCAAGTGTTGAAGCTGGGGAAGAATCCGGTGGCTGCGGTGTTGGTGGTGGTCGCCGGTCGTCTTCTTCTTCCAGTGGGAGAAAGTCGGGCGACAAGCGAAGAACCAAGGCCGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTCGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCGAGGAAAATAAAGAAAGTGGGCCACTCTTTGAAGAAACTTCAACTGGTGATTGATTCCGTTCAAGGCGCAGAGGGCGCGATACAAATTGGCTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTTCTAATGGTGGTGGTGGTGGTGATCACAACAACAACGGCTTCTATAACAGCCATGGAGATGGAGTAGTTACTGGTTTGAAATCTCCACCCTCTGCTTGCAGTCAGACACATGCAGCAGCAGCAGCAGGAAACAAACTTATCACTGCTAGCACCATTAATGGAGAACATCATCATAATCATCATCATCATCATGTTATGATGACAGAAAACCCTTCAGCTCCTTCAGCAGCTGATGCATTAAATATGATGCATGCATCCAATATCAATATCCAAAACTATCAGCAGCTGCAAGAGGATCAGGATACTAAACAATTACTGCTACATTTCAACAATAATAACAATCAAACCCTACCTCCAAGGCCAACTGCAGGAGGAGCCTGGAACAACAATAATTCATCATCATCAGGACTACTGGAAAGAGGTGCTTTCAGAGTGAAGGCGACTTTTGCGGATGAAAAGATTCGTTTTAGTTTGCAAGCAATGTGGGGTTTCAGAGATTTGCAGCTTGAGATAGCAAGGCGTTTCAACCTAAATGATATGAACAACTTGGTTCTAAAGTATTTGGATGACGAAGGAGAATGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGATTTGCACACATCTTCTCACACACGTACAATCAGACTTTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCCGCAACAGCAGCAGCAGTCCATCCTCCTAG 2826 0.442 MEYGGGLVGDGGVFGSMVGGGGEAAADMIEELLVDGCWIEASENNNMMATQTQYMTNNNIPIGMGEGDHFNNHHHNQIECNVPTDHDDDQESGFVVGKRWWIGPRANPGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSPLIHNHYLHESSSSAPVSVNPNTNVHVRFFRSHEYPRHQQQQYGSLFALPVFERGSGTCLGVIEFVITNQTVVNYRPQLDHLSNALEAVDFRSSHNMTIPSAVKVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGVRGKGTAGAAGCGVSVAVPTDQMNNNQMMMNCVSTVDSACYVGDMEVLGFQEVCSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRVPEQQKHMLNSLSLVVQQACRSLHLHVVMDDNENSNHHDHDQDQFTFPTTTNNYMPSSASDAATASLSQVDATSGCSTKDTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWEREREGNSVFSEFGQVLQHDQNSNSRASVEAGEESGGCGVGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATSNGGGGGDHNNNGFYNSHGDGVVTGLKSPPSACSQTHAAAAAGNKLITASTINGEHHHNHHHHHVMMTENPSAPSAADALNMMHASNINIQNYQQLQEDQDTKQLLLHFNNNNNQTLPPRPTAGGAWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFRNSSSSPSS 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05367 941 MobiDBLite consensus disorder prediction 567 611 - -
Trre9g05367 941 PANTHER PROTEIN NLP8 75 936 IPR045012 GO:0003700
Trre9g05367 941 Gene3D - 839 925 - -
Trre9g05367 941 SUPERFAMILY CAD & PB1 domains 829 925 - -
Trre9g05367 941 CDD PB1_NLP 841 922 IPR034891 -
Trre9g05367 941 ProSiteProfiles RWP-RK domain profile. 600 681 IPR003035 -
Trre9g05367 941 SMART PB1_new 840 923 IPR000270 GO:0005515
Trre9g05367 941 Pfam PB1 domain 841 922 IPR000270 GO:0005515
Trre9g05367 941 ProSiteProfiles PB1 domain profile. 840 923 IPR000270 GO:0005515
Trre9g05367 941 Pfam RWP-RK domain 614 661 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05367 Trre-Chr9 58463834 58467080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05367 27 940 NLP Transcription Factor Family AT4G35270 39.900 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre9g05367 PB1 3.7e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05367 - - tpra:123881749 1583.54