Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05366 ATGAAATCAGAAGATAATTCTGATCATAGTGGCGATTCTTCTTCACACAAGAAGAAAGATCATCAACAACAACAACATGTTCTTCACACAAGAAAGAAACGGAAGCATGAAGCAGAATCATCATCATCAGCCGCCAACAACAACAACGAGAACAATGTTGCTCGTGCTTGTAGTGAATGCGGTAAGAAATTCTGGTCATGGAAGGCACTTTTTGGTCACATGCGTTGTCATCCTGAACGTGAATGGAGAGGCATTAATCCTCCTCCCAATTTCCGACGAAGACAATCTTCTTCTTCTTCTTCTCACTCATTCGTCAATACCATGACTCCTAACGATCATGAAGTTGCTTCCTGTTTGATCTTACTTGCAAATTCAAAGTCCAGAGTGGATGATGATGATGACAATGATGTATTAGTAGATCACGAAAATAACAATGGTCATTTTGTGTGTTCATTTTGTAACAAGGTTTTTGGATCCCATCAGGCTCTTGGTGGACACAGAGCAAGTCACAAGAATGTCAAGGGCTGTTTCGCCAATACAACTCCTCCAGTAACCGCTTCCACTAACAGAATGATGACGTGGACACAACAAACCACCCAAGGAGGAGTAAGAGATCATGCTTTTCTTGTTACAACTCCTGTTCATCATCATGATCATGAACAACAACAACACCACCAGATAATGGTTCCTAATGCTGGTGATGTGGAAAGGGAAGCGGTTAATGAGATAAGTGGCGGAGGAGGAGGAGGAGGGGGACACCACCAATGTAGCATATGTTTTAGGGTGTTTACCACTGGACAAGCACTTGGTGGTCACAAAAGGTGTCACTGGGAAAAAGGGGAAACCACCGCAGGAGCAGGAGCAGCAGCAGCATTGGACTCTGTTGCAACAACATCCAACAACAACAACAAGTCTTCTTCAAGTGTTAATGTTGTTGACTTGAATTCCCCGTTTCCTCCACCACCACCACCACCTCCTGATGATCCTGATGAGCCTAATCTTGATTTGAGGTTGGGACTTTAA 1023 0.435 MKSEDNSDHSGDSSSHKKKDHQQQQHVLHTRKKRKHEAESSSSAANNNNENNVARACSECGKKFWSWKALFGHMRCHPEREWRGINPPPNFRRRQSSSSSSHSFVNTMTPNDHEVASCLILLANSKSRVDDDDDNDVLVDHENNNGHFVCSFCNKVFGSHQALGGHRASHKNVKGCFANTTPPVTASTNRMMTWTQQTTQGGVRDHAFLVTTPVHHHDHEQQQHHQIMVPNAGDVEREAVNEISGGGGGGGGHHQCSICFRVFTTGQALGGHKRCHWEKGETTAGAGAAAALDSVATTSNNNNKSSSSVNVVDLNSPFPPPPPPPPDDPDEPNLDLRLGL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05366 340 MobiDBLite consensus disorder prediction 315 329 - -
Trre9g05366 340 SUPERFAMILY beta-beta-alpha zinc fingers 252 279 IPR036236 -
Trre9g05366 340 Coils Coil 333 340 - -
Trre9g05366 340 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Trre9g05366 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Trre9g05366 340 MobiDBLite consensus disorder prediction 80 108 - -
Trre9g05366 340 SUPERFAMILY beta-beta-alpha zinc fingers 56 170 IPR036236 -
Trre9g05366 340 MobiDBLite consensus disorder prediction 297 314 - -
Trre9g05366 340 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Trre9g05366 340 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g05366 340 MobiDBLite consensus disorder prediction 90 108 - -
Trre9g05366 340 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 339 - -
Trre9g05366 340 Pfam C2H2-type zinc finger 147 171 - -
Trre9g05366 340 Pfam C2H2-type zinc finger 253 278 - -
Trre9g05366 340 Pfam C2H2-type zinc finger 56 79 - -
Trre9g05366 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Trre9g05366 340 MobiDBLite consensus disorder prediction 297 340 - -
Trre9g05366 340 MobiDBLite consensus disorder prediction 1 50 - -
Trre9g05366 340 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Trre9g05366 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Trre9g05366 340 SMART c2h2final6 254 276 IPR013087 -
Trre9g05366 340 SMART c2h2final6 55 77 IPR013087 -
Trre9g05366 340 SMART c2h2final6 148 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05366 Trre-Chr9 58433764 58434786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05366 49 314 C2H2 Transcription Factor Family AT4G35280 44.000 3.05e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g05366 zf-C2H2_6 3.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05366 - - tpra:123920869 360.918