Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05360 ATGGGTTGTTGTCAATCTTCTTTGTTTAGAAGAAGAGTAAGAGAGAATCATCATCATCATCCTGAAAAACACAAAGAAAAAGAACAGCAACAACCCTATCATCACCAGCTTCAGCACCGCAACAACAACAACAATCTGAATCAAATTGATGGTGAGAAAGAATCAGCAACGGTGGATCCTTCATCTTTTACTTTCTCTGAGTTTTCATTAGCAGACTTGAAAGCAGCAACGAATAATTTCAGCTCAGAGTATATCGTTTCTGAGAGTGGTGAGAAAGCACCTAACTTGGTTTATAAAGGTAGGTTACAGAATCAGAAGCGTTGGATTGCTGTGAAGAAGTTCAGTAAAGCTGCTTGGCCGGATCCAAAGCAATTTGTTGAAGAAGCTTCTGGTGTTGGAAAATTGCGTCATCCTAGGCTTGCTAATTTGATTGGTTATTGTTGTGATGGTGATGAAAGATTACTTGTTGCTGAGTTTATGCCTAATGATACCCTCGCCAAACACCTCTTCCACTGGGAAAATCAGACTATTGAGTGGGCCATGAGGTTAAGAGTTGCTCATTATATTGCACAAGCTTTGCATTATTGTACTTCTGAGGGACGGCCCTTGTACCATGATTTGAATGCTTATCGCGTTCTATTCGATGAGGAAGGTGATCCGCGTCTCTCTTGTTTTGGTTTAATGAAGAACAGCAGGGATGGAAAAAGTTATAGCACAAACCTTGCTTACACACCTCCTGAATATTTAAGAAATGGAAGAGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTCGACCTACTCAGTGGCAAGCATATCCCTCCTAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTGATGGATTCTCATTTGGAGGGAAAGTTTTCTACCGAAGAGGCAACAGTAGTTGTCAATCTTGCCTCTAAATGTTTGCAATATGAACCGCGAGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCATTGCACACAAAACCTGATGTTTGTTCTCACATCATGCTTGGAATTCCAAAGCAAGAAGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGCTCAAGAATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACTCACTACAGAGATGATGAAGGGACTAATGAGTTGTCATTCCAAGAGTGGACTCAACAAATGAGAGATATGCTGGAGGCAAGGAAGCGCGGAGACTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTCATTGATGTGGGAACGATGGTCTCACCCACAGTTTTTGCAAGGCGCAGTCTATGCTACCTGTTATGTGATCAACCAGATCCTGCTCTACGAGATGCAATGCAAGCACAATGCGTATATCCAGACTGGCCCACAGCTTTCTACATGCAGTCTGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCGGCTGACATGTTAAATGAGGCGGCTGCATTAGAAGAGAAGAAGCAAAGAGGAGCGAGAGGATCATAG 1563 0.4299 MGCCQSSLFRRRVRENHHHHPEKHKEKEQQQPYHHQLQHRNNNNNLNQIDGEKESATVDPSSFTFSEFSLADLKAATNNFSSEYIVSESGEKAPNLVYKGRLQNQKRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVAHYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVCSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKKQRGARGS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05360 520 Gene3D Transferase(Phosphotransferase) domain 1 161 351 - -
Trre9g05360 520 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 31 515 IPR045845 GO:0004672|GO:0009742
Trre9g05360 520 SUPERFAMILY TPR-like 412 514 IPR011990 GO:0005515
Trre9g05360 520 Gene3D Tetratricopeptide repeat domain 409 518 IPR011990 GO:0005515
Trre9g05360 520 FunFam probable serine/threonine-protein kinase At4g35230 55 159 - -
Trre9g05360 520 SUPERFAMILY Protein kinase-like (PK-like) 60 340 IPR011009 -
Trre9g05360 520 ProSiteProfiles Protein kinase domain profile. 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05360 520 FunFam probable serine/threonine-protein kinase At4g35230 409 518 - -
Trre9g05360 520 Gene3D Phosphorylase Kinase; domain 1 54 159 - -
Trre9g05360 520 Pfam Protein tyrosine and serine/threonine kinase 97 335 IPR001245 GO:0004672|GO:0006468
Trre9g05360 520 MobiDBLite consensus disorder prediction 1 35 - -
Trre9g05360 520 FunFam probable serine/threonine-protein kinase At5g41260 161 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05360 Trre-Chr9 58370123 58377437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05360 14 343 Glycoside Hydrolase AT3G07070 33.523 2.37e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre9g05360 PK_Tyr_Ser-Thr 4.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05360 K14500 - gmx:100808907 931.398