Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05354 ATGGAGATGCAACAGCTTCTTAGCATGGGTTTCCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCCACCGGAGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCCAATTCAACCACTCTTGTTAACTCTTCATCTTCACCTTCTTCACCATCACCTTCATCACTTCCTGCTTTCCAACCCAAACTCGACCGTTTCTTCCACACCCCCCCACAACCCAATAATGTCTCACAACAACAACAACAACAACAAACAGAGGGACCAACCAAACGCATCAAGTTATCATCTTCACCAACCCCACAAACACAGACACAATCTCAAACACAGACACAAACACTACAAAACAAACCCTCTTTTTTCTTCAACCGTTCTAAAAAACAACTAACTCAAACCCACACTCACGAACCCTTATACGAACGTCTCCGTCCAACAACATTGGACGATGTTGTCGGACAAGATCATCTTCTATCAACAAATTCCATTCTTCGTTCCGCAATCCAACGCAACCGTCTTCCTTCTATCCTCTTGTGGGGTCCACCAGGTACAGGTAAAACCACCATTGCAAAAGCTATTGTCAATTCATCCAATTCAACTTCAACATTCTATCGCTTTGTATCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGATGCTGTTGATGAAGCTAGAAAACTTAGACTCAAAACAAATCAAACCACTGTTCTTTTTGTGGATGAAGTTCATAGGTTTAATAAATCTCAACAAGACTCTTTTTTACCTGTTATTGAAGATGGTAGCATTGTCTTTGTTGGTGCTACTACCGAAAACCCTTCTTTTCATTTGATTACACCACTTTTGTCTCGTTGTCGTGTTCTTACACTTAACCCTCTTCAACCCCATCATCTTGTTTTGCTTCTTAACCGTGCTGTCACTGATATAGACAAAGGGTTGGTGCAAAGCCTCGGTTTTCGTTCCGGTTCTGGTTCTTCCCAGGTTGATGTAAGTGTTGGTGAGGATGTGGTTGATTTTATAGCGAACAATTGCGATGGAGATGCTCGTGTTGCTTTGAATGTATTGGAGATCGCTGCTGTTAATGCGGCTGCTCGGGTTCAACATGATAATGAAGAATGCAAGGATGATGTTGGTGTTAATGTTAGTGTTGAGGATGCTAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGTGAAGAACACTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGTTGGCAAGAATGTTAAAGGGAGGTGAAGAGCCACTTTATATTGCGCGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCGGATCCTTTAGCTCTTAATCAAGCTGTTTCCTGCTACCAAGCTTGCCACTTTATAGGAATGCCTGAGTGCAATGTGATACTTGCACAATGCGTTGCGTACTTGGCTTTGGCTCCTAAATCTATAGCAGTTTATCGAGCGATTGGAGCTGCTGAGAAGGTAGTGAGGGAATCTGTTGGACAGAATGAAGGTGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATATATATACACTCCTGATAACCCTTCTGCAACACAGAGCTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCCTCTGAATCTGATGGATGA 1740 0.4333 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSTTLVNSSSSPSSPSPSSLPAFQPKLDRFFHTPPQPNNVSQQQQQQQTEGPTKRIKLSSSPTPQTQTQSQTQTQTLQNKPSFFFNRSKKQLTQTHTHEPLYERLRPTTLDDVVGQDHLLSTNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSNSTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLVLLLNRAVTDIDKGLVQSLGFRSGSGSSQVDVSVGEDVVDFIANNCDGDARVALNVLEIAAVNAAARVQHDNEECKDDVGVNVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAEKVVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSATQSYLPPSLQGFKFLHWPDRNPSESDG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05354 579 Gene3D - 128 294 IPR027417 -
Trre9g05354 579 Pfam UBA/TS-N domain 4 35 IPR015940 -
Trre9g05354 579 Pfam ATPase family associated with various cellular activities (AAA) 178 290 IPR003959 GO:0005524|GO:0016887
Trre9g05354 579 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 575 - -
Trre9g05354 579 FunFam Putative AAA family ATPase 394 497 - -
Trre9g05354 579 SMART AAA_5 174 296 IPR003593 GO:0016887
Trre9g05354 579 MobiDBLite consensus disorder prediction 39 61 - -
Trre9g05354 579 MobiDBLite consensus disorder prediction 39 120 - -
Trre9g05354 579 MobiDBLite consensus disorder prediction 74 120 - -
Trre9g05354 579 Pfam AAA C-terminal domain 332 419 IPR032423 -
Trre9g05354 579 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Trre9g05354 579 CDD AAA 154 289 - -
Trre9g05354 579 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Trre9g05354 579 Gene3D - 296 379 - -
Trre9g05354 579 FunFam Replication-associated recombination protein A 131 295 - -
Trre9g05354 579 Pfam MgsA AAA+ ATPase C terminal 420 570 IPR021886 -
Trre9g05354 579 Gene3D - 498 577 - -
Trre9g05354 579 Gene3D - 2 54 - -
Trre9g05354 579 PRINTS CbxX/CfqX superfamily signature 177 192 IPR000641 GO:0005524
Trre9g05354 579 PRINTS CbxX/CfqX superfamily signature 228 247 IPR000641 GO:0005524
Trre9g05354 579 PRINTS CbxX/CfqX superfamily signature 350 362 IPR000641 GO:0005524
Trre9g05354 579 Gene3D - 394 497 - -
Trre9g05354 579 FunFam AAA-type ATPase family protein 296 378 - -
Trre9g05354 579 CDD HLD_clamp_RarA 296 394 - -
Trre9g05354 579 SUPERFAMILY post-AAA+ oligomerization domain-like 404 573 IPR008921 GO:0003677|GO:0006260
Trre9g05354 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 377 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05354 Trre-Chr9 58332016 58333755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05354 140 420 Core DNA Replication Machinery Family AT1G77470 24.126 1.46e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05354 K07478 - gmx:100799257 845.499