Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05350 ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACCTTTGCAGCTGAAGCTGTGAGACAGAGTTTTGGAGCAAGATCACTCCCTTCTTCAATTGGCTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAACTGCTACTCCTCCAGTCAAGCAAGGTGGAGCAAATAGGCCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTATGGATTTGATCCTCTAGGACTTTCAGATCCAGAAGGAACAGGAGGTTTCATTGAGCCAAGATGGCTAGCATACGGCGAGATAATCAACGGTCGTTACGCAATGTTGGGAGCAGTAGGAGCAATAGCGCCTGAAATCCTTGGCAAAGCCGGTTTAATTCCACAGGAAACCGCTCTGGCTTGGTTCCAAACCGGCGTGATTCCACCAGCAGGAACATACAACTACTGGGCAGACAATTACACACTCTTTGTATTGGAATTAGCACTTATGGGATTTGCAGAACATAGAAGATTCCAAGATTGGTATAACCCTGGTTCAATGGGAAAACAATACTTCTTAGGACTTGAAAAAGGTCTTGGTGGTTCTGGTGAACCAGCTTACCCAGGTGGACCTTTGTTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAAGATTTAAAGCTGAAAGAAGTTAAGAATGGAAGATTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGGTCTTGTTACAGGTGTTGGACCATATCAAAACCTTTTAGATCATTTGGCTGATCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA 834 0.4341 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKATATPPVKQGGANRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLELALMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05350 277 Gene3D Chlorophyll a/b binding protein domain 59 276 - -
Trre9g05350 277 Pfam Chlorophyll A-B binding protein 68 246 IPR022796 -
Trre9g05350 277 FunFam Chlorophyll a-b binding protein, chloroplastic 58 276 - -
Trre9g05350 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 272 IPR001344 GO:0009765|GO:0016020
Trre9g05350 277 SUPERFAMILY Chlorophyll a-b binding protein 56 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05350 Trre-Chr9 58310590 58312516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05350 1 277 Chloroplast and Mitochondria Gene Families AT1G61520 86.643 1.93e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05350 K08909 - gmx:100784090 483.796