Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05347 ATGGCCACCACCAGCGAACAACTTCCCTGCGACGCCGACGGCGTTTGCATGGTGTGCAAAAACAAACCTCAAGAAACCGAAACTCTCAACTGCAGAACATGCGCATCACTCTGGCATGTTCCTTGTTTACCAGAAGTTCCAACAACTATCCTCGATTGGGAATGTCCCGATTGTTCTACACCTCTTCTCGTTAACGACAACTCCATCGCCGATACTGTATCAGCGCCGGCAACGGCAACTGCTCCGTCTGTCGCCGGCGATCTCATTTCTGCTATTCGTGCCATCGAAAATGACGCTTCACTTACCGATGAAGAAAAAGCAAAGAAACGTCAAGAACTAGTTGGTGGATCTTCGAAAGCAAGTGATGAAATGAAAAATAGACGTAGTGGTGTTCTTGATATCTTCGATGGTAGCATTAACTGTTCTATCTGTATGCAGTTGCCTGAGAGACCCGTCACTACTTCATGTGGGCACAATTTTTGCCTGAAGTGTTTTGAAAAATGGATCCAGCAAGGGAAACGAACTTGTGTGAATTGTAGGGCTGCAATTCCAGCAAAGATGGCGAGTAATCCAAGAATCAATGCACAGTTGGCAATTGGGATTCGTATGGCCAAACTAGCTAGATCGGAGAATGTTGGAGGAAGCACTGCTACAAAGGTTTATCATGTTGTTCACAATGATGAGCGTCCCGACACTTGTTTCAGGACGGAGAGAGCAAAGAAAACCGGGAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACCGATCAGTGCTGAGAATGATCCAATAAGGAAACGTGGGGTTCTTGTTGGCGATACTTGGGAGGATAGGATGGAGTGCCGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTACTCATGGTGCTCAATCTGTTGCTCTTTCTGGGGGCTATGTTGATGATGAGGATCACGGTGAGTGGTTCTTGTATACTGGAAGTGGCGGAAGGGATTTGAGTGGGAACAAACGGACAAACAAAGATCAGTCCTTTGATCAGCAGTTTGAGAATATGAACGAGGCTTTGAGACTCAGCTGCCGAAAAGGCTACCCTGTTCGTGTTGTCAGGTCCCACAAGGAGAAACGATCCTCTTATGCTCCGGAAGCAGGAGTGAGATATGATGGGGTTTACAGAATTGAGAAATGTTGGCGCAAAGTTGGAATGCAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGTCCACTACCTACAGTCAAGGAGTTTAAGGGTGCAGTTGATATTACTGAAAGGAAGGGTGACCCTTCATGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGCAAGAAGCCAATGAATGTTGTAGATCCTATAGATCCAACAAAAATTCAAATTGTTAGGCCAAAGGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATTTGTCGCAAGGTGTTGGCTTCCCCGCTTACTACACCTTGTGCCCATAACTTCTGCAAAGGCTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAACAGGGCCACTAAAAGTGGACGCAGTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTACCTTCAGAATCCTCAGGTTAACAGGGAAATGATGGGGGTCATAGAATCACTCCAGCGTCAGGCTGAAGAGATGGATGAGGACAACTCTGAAGAATCAAGTGCTAAAAGTTCTGAAGAATCAGGTGCTAAAACTGATGAGAATCTGAAGCCGGATGAGGAGACCGACATTTCAAAACCCTTGGATTCAGGTGAGAAAGTTGTGGAAGAAATTGACGAGAATGATCTGAATCCTCCTCCACAGAAGCGGGGAAAAGGTGCCAATGGCAAGACTGTGGTGAACATGGAGGAACCTGTTGATGAGGCTGAAGTGGAAAACAAAGCAGTGACTTGCAATTAG 2079 0.4603 MATTSEQLPCDADGVCMVCKNKPQETETLNCRTCASLWHVPCLPEVPTTILDWECPDCSTPLLVNDNSIADTVSAPATATAPSVAGDLISAIRAIENDASLTDEEKAKKRQELVGGSSKASDEMKNRRSGVLDIFDGSINCSICMQLPERPVTTSCGHNFCLKCFEKWIQQGKRTCVNCRAAIPAKMASNPRINAQLAIGIRMAKLARSENVGGSTATKVYHVVHNDERPDTCFRTERAKKTGKANACSGKIFVTIPKDHFGPISAENDPIRKRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKVGMQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPTVKEFKGAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNVVDPIDPTKIQIVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRATKSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEEMDEDNSEESSAKSSEESGAKTDENLKPDEETDISKPLDSGEKVVEEIDENDLNPPPQKRGKGANGKTVVNMEEPVDEAEVENKAVTCN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05347 692 SMART ring_2 517 574 IPR001841 -
Trre9g05347 692 SMART ring_2 16 58 IPR001841 -
Trre9g05347 692 SMART ring_2 141 179 IPR001841 -
Trre9g05347 692 MobiDBLite consensus disorder prediction 611 659 - -
Trre9g05347 692 Pfam SAD/SRA domain 274 422 IPR003105 -
Trre9g05347 692 ProSiteProfiles Zinc finger RING-type profile. 517 575 IPR001841 -
Trre9g05347 692 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Trre9g05347 692 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Trre9g05347 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 79 IPR013083 -
Trre9g05347 692 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Trre9g05347 692 SUPERFAMILY RING/U-box 509 600 - -
Trre9g05347 692 SMART G9a_1 266 423 IPR003105 -
Trre9g05347 692 FunFam Predicted protein 104 206 - -
Trre9g05347 692 SUPERFAMILY PUA domain-like 245 439 IPR015947 -
Trre9g05347 692 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Trre9g05347 692 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 614 IPR045134 -
Trre9g05347 692 Coils Coil 588 615 - -
Trre9g05347 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 204 IPR013083 -
Trre9g05347 692 ProSiteProfiles Zinc finger RING-type profile. 141 180 IPR001841 -
Trre9g05347 692 CDD RING-HC_ORTHRUS_rpt1 138 184 IPR047498 -
Trre9g05347 692 SUPERFAMILY RING/U-box 133 187 - -
Trre9g05347 692 Gene3D - 242 436 IPR036987 -
Trre9g05347 692 SUPERFAMILY FYVE/PHD zinc finger 7 60 IPR011011 -
Trre9g05347 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 626 IPR013083 -
Trre9g05347 692 Pfam RING-type zinc-finger 517 558 IPR027370 -
Trre9g05347 692 MobiDBLite consensus disorder prediction 103 122 - -
Trre9g05347 692 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 IPR018957 GO:0046872
Trre9g05347 692 MobiDBLite consensus disorder prediction 600 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05347 Trre-Chr9 58287295 58291307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05347 7 606 C2H2 Transcription Factor Family AT5G39550 61.450 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05347 K10638 - gmx:100786796 943.34