Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05340 ATGGCCGCCGCAGCCCGTCCCCTCGTCACCGTCCATTCTCTCGAAGGAGATATGGCGACTGACTCCCCCGTAACTCTTCCCATTCCCGATGTGATGCGCGCTTCCATCCGTCCTGACATAGTGAACTTCGTTCACTCCAACATCTCCAAAAACAGCCGTCAACCCTATGCCGTGAGCCGCAAAGCTGGCCACCAAACATCCGCTGAATCATGGGGTACCGGACGTGCTGTTTCCCGTATCCCTCGTGTTGCTGGTGGTGGTACTCATCGTGCTGGTCAAGCTGCTTTCGGAAACATGTGTCGCGGTGGTCGCATGTTCGCTCCTACCAGGATCTGGCGCCGCTGGCACCGTAAGATCAATGTTAACCAGAAACGATATGCTGTTGTGTCCGCTATCGCTGCATCTGCTGTTCCTTCTCTTGTTCTCGCTCGTGGTCACCGGATCGAGTCTGTTCCCGAGTTTCCACTCGTTGTTGGAGATTCTGCTGAAGGAGTTGAGAAAACTAAGGAAGCTATTAAGCTTCTGAAACATGTTGGAGCTTTCCCCGATGCCGAGAAAGCGAAAAACAGCCACGGAATTCGTCCTGGAAAAGGTAAAATGCGTAACCGTCGTTACATTTCACGTAAAGGTCCACTGATCGTATATGGAACCGAAGGAGCGAAAGCGGTTAAGGCTTTCAGGAACATTCCTGGTGTTGAGATCACTAATGTTGAAAGGTTGAGTCTATTGAAACTAGCACCTGGTGGTCATCTTGGTAGATTTGTGATTTGGACCAAATCTGCTTTCGAGAAATTGGATTCAATTTATGGGTCTTTTGATAAGGCTTCTGAGAAGAAAAAGGGTTATGTTCTTCCTAGGGCTAAGATGGTGAATTCTGATCTCACTAGGATTATTAATTCTGATGAGGTTCAGAGTGTTGTTAGGCCTGTTAAGAAGGATATTAAGAGAGCTACTTTGAAGAAGAATCCTTTGAAGAATCTCAATGTTATGCTCAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAAGCTGAGAGGGTTAAGGCCAAGAAGGAAAAGCTTGACAAGAAGAGAAAGACTGTTTCCAAGGAAGAAGCTTCTGCAATCAAGGCAGCAGGAAAAGCATGGTATCATACTATGGTGTCGGATTCTGATTATACAGAATTTGATAACTTCTCCAAGTGGTTGGGCGTCTCACAGTGA 1218 0.4713 MAAAARPLVTVHSLEGDMATDSPVTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHVGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLSLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPVKKDIKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05340 405 Coils Coil 342 369 - -
Trre9g05340 405 Pfam Ribosomal protein L4/L1 family 28 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Trre9g05340 405 FunFam 60S ribosomal protein L4 3 308 - -
Trre9g05340 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre9g05340 405 SUPERFAMILY Ribosomal protein L4 8 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre9g05340 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Trre9g05340 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Trre9g05340 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05340 Trre-Chr9 58229888 58232405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05340 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.426 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05340 K02930 - gmx:100779764 722.62