Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05333 ATGATTGAGAAAATGGAGAAGGAGGAAGCAAAGCAAGTAACCGATGAAGAAGCTTTTCTTTTTGCAATGGAACTAGTTGGTGCTTCAGCTGTTCCAATGGTTCTAAAATCAGCTTTGGATCTTGGCATAATTGAAATTATAGCCAAAGCTGGTCCTAATGCATACCTATCATCTTCTAACATTGCTTCTCAAACACCTTCCATAAAAAACAAAGATGCACCTTCTATGTTGGACCGTTTGTTGCGTCTATTGGCTAGCTACAAAATCCTTACTTGTTCTATCCAACATCAAGATCAAGATGATGGAGATTCTAATGAAATTAGACTCTATGGTCTTCACCCTTTTGCTAAATATTTTGTCAATAATAGTGATCAAGGTGGTGTCTCCATGGTTTCTTCTTTTCTCATGCATCACGACAAAGTCCTCCAAGACTTGTGGTACCACTTGACAGAATCAATTCAGGAGGGTGGCCTTCCATTTTACAATGCTTATGGAATGACTGTCTTTGAATTCCAAGGCAAAAATCCAAGGTTCAACAAGCTTTTCAACAATGGCATGTCTAATGTCTCTAGCATTATAATGAAGAAAATTCTTGAGACCTATTCAGGTTTTGAGGGTCTTGAATCTGTTGCTGATGTTGGTGGTGGGACTGGAGCTATAAGTAACATGATTGTATCTAAGTATCCCAACATTAAAGCTATTAATTATGATCTGCCCCATGTGATTAACGAAGCTCCGTCTTATCCAGGTGTGGAGCATGTTGGTGGAGACATGTTTGTGAATGTTCCAAAAGCTGATGCCATTTTCATGAAGTGGGTATTACATGATTGGAATGAAGAGCAATGCTTGAAAATTTTGAAGAATTGTTATGATTCACTTCCTGACACAGGAAAGGTGATTGTGGCTGAATGCATTGTTCCAACAGTTCCAGACTCAAACTTAGCCTCAAAATCTGTGGTTCAAATGGATGTTATCATGTTGTGTCATAGCTCAGGTGGAAAAGAGAGAACAGAGAAAGAGTTTGAGGCTTTGGCTAAAGGAGCTGGATTTCAAGGATTCAAAATTGCATCTTGTGCTTTGAACATGTATGTCATGGAATTTCTTAAGAATGTTTAA 1116 0.3835 MIEKMEKEEAKQVTDEEAFLFAMELVGASAVPMVLKSALDLGIIEIIAKAGPNAYLSSSNIASQTPSIKNKDAPSMLDRLLRLLASYKILTCSIQHQDQDDGDSNEIRLYGLHPFAKYFVNNSDQGGVSMVSSFLMHHDKVLQDLWYHLTESIQEGGLPFYNAYGMTVFEFQGKNPRFNKLFNNGMSNVSSIIMKKILETYSGFEGLESVADVGGGTGAISNMIVSKYPNIKAINYDLPHVINEAPSYPGVEHVGGDMFVNVPKADAIFMKWVLHDWNEEQCLKILKNCYDSLPDTGKVIVAECIVPTVPDSNLASKSVVQMDVIMLCHSSGGKERTEKEFEALAKGAGFQGFKIASCALNMYVMEFLKNV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05333 371 Pfam Dimerisation domain 33 85 IPR012967 GO:0046983
Trre9g05333 371 PANTHER O-METHYLTRANSFERASE 23 352 IPR016461 GO:0008168
Trre9g05333 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 366 IPR029063 -
Trre9g05333 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 369 IPR016461 GO:0008168
Trre9g05333 371 FunFam Caffeic acid 3-O-methyltransferase 2 119 - -
Trre9g05333 371 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Trre9g05333 371 PIRSF O-mtase 1 369 IPR016461 GO:0008168
Trre9g05333 371 FunFam Caffeic acid O-methyltransferase 122 369 - -
Trre9g05333 371 Gene3D - 2 119 IPR036388 -
Trre9g05333 371 SUPERFAMILY "Winged helix" DNA-binding domain 15 122 IPR036390 -
Trre9g05333 371 CDD AdoMet_MTases 210 301 - -
Trre9g05333 371 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05333 Trre-Chr9 58162206 58165784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05333 12 371 Monolignol Biosynthesis Gene Families AT5G54160 61.111 1.59e-161 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05333 K13066 - gmx:100780100 483.026