Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05320 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCGTGGGACACAAATGAAGAACGACTCAGGGAGTATTTCAGTAACTATGGTGAAGTTAAGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTCATTGACCCAGCTGTTGCTGAAATTGTCATCAAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTCGGGATGATCAGAATGTATTGAGTAGAACCAGTGGCAGCATCCAAGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCACGAGGCTTTGGGTTTATCACTTATGATTCCGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCTCCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAGTCAGGGGTACAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGGTCGCAATGCATTTGCGCCATTTGGTTCTGCTTATGGAATGGGTATGAATTTCGAGCCTGGTTTGAGTCCTGGATTTGGAGGTAATGCAAATTTCAATGGAAATCTTAGCTATGGACGGGGCTTAAATCCGTACTTCATCAGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAATGGAGGAAACAATTCGTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGGAATGGAAGCCTTAACTATGGAACAAATTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGGAATGTTGGAGGAAATGCATTCGGCAATACTGGAGTCAACTGGAGTTCTTCCCCGATTTCTGGACACGGGGGAGGGAACAATGTGTCACAGGGTAGTGGCAACCTTGGATATGGAGGTGGCAACAACGGTTATGGATTAGGGACCGAAGGGTATGGAAGAAGCAGTGGTTCCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGGTGTTGATGGTGCTTTTGCTGATTTTTACAACAATAATTCGGTTTATGGGGACACCACTTGGCGATCTTCGAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGTAAGAGCGACATTTCTTACTCATACTTATCTCAACTTCTCAGTCAATCAGCATAA 1482 0.4467 MQSDNGKLFIGGISWDTNEERLREYFSNYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSTVGGYGLRMDGRFSPVASGRNAFAPFGSAYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFISSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSSAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSASNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGKSDISYSYLSQLLSQSA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05320 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Trre9g05320 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Trre9g05320 493 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Trre9g05320 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Trre9g05320 493 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre9g05320 493 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trre9g05320 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Trre9g05320 493 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Trre9g05320 493 CDD RRM2_Hrp1p 107 184 - -
Trre9g05320 493 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Trre9g05320 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre9g05320 493 SUPERFAMILY RNA-binding domain, RBD 103 202 IPR035979 GO:0003676
Trre9g05320 493 Gene3D - 4 88 IPR012677 -
Trre9g05320 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trre9g05320 493 Gene3D - 103 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05320 Trre-Chr9 58071073 58073127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05320 8 299 Eukaryotic Initiation Factors Gene Family AT1G71770 27.410 2.89e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05320 K14411 - gmx:100795907 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05320 9 58071073 58073127 Trre9g05320 9 58071073 58073127 ECH