Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g05320 | ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCGTGGGACACAAATGAAGAACGACTCAGGGAGTATTTCAGTAACTATGGTGAAGTTAAGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTCATTGACCCAGCTGTTGCTGAAATTGTCATCAAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTCGGGATGATCAGAATGTATTGAGTAGAACCAGTGGCAGCATCCAAGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCACGAGGCTTTGGGTTTATCACTTATGATTCCGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCTCCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAGTCAGGGGTACAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGGTCGCAATGCATTTGCGCCATTTGGTTCTGCTTATGGAATGGGTATGAATTTCGAGCCTGGTTTGAGTCCTGGATTTGGAGGTAATGCAAATTTCAATGGAAATCTTAGCTATGGACGGGGCTTAAATCCGTACTTCATCAGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAATGGAGGAAACAATTCGTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGGAATGGAAGCCTTAACTATGGAACAAATTCTGCAAATTCCAGTGCATACATTGGATCAGGGAGTGGGAATGTTGGAGGAAATGCATTCGGCAATACTGGAGTCAACTGGAGTTCTTCCCCGATTTCTGGACACGGGGGAGGGAACAATGTGTCACAGGGTAGTGGCAACCTTGGATATGGAGGTGGCAACAACGGTTATGGATTAGGGACCGAAGGGTATGGAAGAAGCAGTGGTTCCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGGTGTTGATGGTGCTTTTGCTGATTTTTACAACAATAATTCGGTTTATGGGGACACCACTTGGCGATCTTCGAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGTAAGAGCGACATTTCTTACTCATACTTATCTCAACTTCTCAGTCAATCAGCATAA | 1482 | 0.4467 | MQSDNGKLFIGGISWDTNEERLREYFSNYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSTVGGYGLRMDGRFSPVASGRNAFAPFGSAYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFISSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSSAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSASNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGKSDISYSYLSQLLSQSA | 493 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g05320 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 165 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 69 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Trre9g05320 | 493 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 475 | - | - | |
Trre9g05320 | 493 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - | |
Trre9g05320 | 493 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Trre9g05320 | 493 | CDD | RRM2_Hrp1p | 107 | 184 | - | - | |
Trre9g05320 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 104 | IPR035979 | GO:0003676 | |
Trre9g05320 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 202 | IPR035979 | GO:0003676 | |
Trre9g05320 | 493 | Gene3D | - | 4 | 88 | IPR012677 | - | |
Trre9g05320 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Trre9g05320 | 493 | Gene3D | - | 103 | 189 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g05320 | Trre-Chr9 | 58071073 | 58073127 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g05320 | 8 | 299 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.410 | 2.89e-16 | 79.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g05320 | K14411 | - | gmx:100795907 | 826.239 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre9g05320 | 9 | 58071073 | 58073127 | Trre9g05320 | 9 | 58071073 | 58073127 | ECH |