Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05317 ATGCATAATTCGTCTTTGTGTCGTAAAAGACCACATGAGTCCTCTTTGGCTAATGTGGAAGGTCAAGATCAATCATATGTTGCCACTAGAGTTGGCGCATCAACTAATGAATACTGCCATGTTGTTGAGTCTAAAAGTGAAAATGAAGTTGACGGATATAAATGGCGCAAATATGGGCGGAAACCAATTAAAGGGAACGAACATCGAAGACATTACTATCGATGTACGGCTGCTGGATGTCCAGCCATAAAGAATGTTCAAAAATCCTCTTGTGATTCAACAAAGTTCATAATTACGTACAAGAGACAACATGACCACAGTGGAAGTGGTATCCCTCAGAAGTTGGAAGACAAATATGAAGATATTGTTTGGGATAATGTGAATATATTTCGAGCTATCATCATTCCAAACCAAGATCTTAAAATTGATTTAAACATTCCAAACCAGGATCTTGAAATTGATTTAAATGATGAAGAGCTACAAAATGAACATCCTGGTACACCATCTGATGCATAA 516 0.3721 MHNSSLCRKRPHESSLANVEGQDQSYVATRVGASTNEYCHVVESKSENEVDGYKWRKYGRKPIKGNEHRRHYYRCTAAGCPAIKNVQKSSCDSTKFIITYKRQHDHSGSGIPQKLEDKYEDIVWDNVNIFRAIIIPNQDLKIDLNIPNQDLEIDLNDEELQNEHPGTPSDA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05317 171 Gene3D WRKY domain 34 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g05317 171 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g05317 171 SMART WRKY_cls 49 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05317 171 MobiDBLite consensus disorder prediction 1 16 - -
Trre9g05317 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 113 IPR044810 GO:0003700
Trre9g05317 171 SUPERFAMILY WRKY DNA-binding domain 48 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g05317 171 ProSiteProfiles WRKY domain profile. 44 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05317 171 Pfam WRKY DNA -binding domain 51 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05317 Trre-Chr9 58055574 58056758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05317 31 106 WRKY Transcription Factor Family AT2G04880 46.154 1.70e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g05317 WRKY 3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05317 - K18834 psom:113302664 86.6557