Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05311 ATGTCTGTGAATGGAAGAGTTTCTGGTTCAAATGGAAAATTGTCATCATCAAAAATCAAGTCTTGGAAAGGAAATGAGTCTTGGCATGTTTCTAATTCTAGTACAACATGTAGGTGGAAACTGTTTCTCTTTTGGGTTTTTGGTGTTGTTGTTTCTATAGGGAGTGTTTGGTTTATCTTTAGTAGTTTCAATATTAAGAATTTAAGTAAAGAATCAGCTTGTGAAAAGAGTACACAAACCTTGCTACAACGTTACAATGTCAGTAGGAAACAGCTTCATGCTTTGGCTTCTTTGTTCTCTGGATCAGATCAGATTTTGTTGAATTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATAATCAACACTCCTCCACATTCTCCGTGTCCAAAGAATCAGGAGCTACAAAAAGAGTATAGACATGTTGCAGAATTTATAGAACAATGCCCAATTTTTGATGATTTTGTTCACACAAGGCTTGGATTATCATTCCCTTGGAAAACATATGTTACATTGGACTCTGCACTTTTGACCAATTGGCTTAATGTTTTGTTCTGTGGAAAGGTGTTCTTGGGTCCTTATTGGAATTATACTGTCAATTTATCTAGTTTAGTTAAAGGATGCTGTTTGGTCCTTATTGGAATTATACTGTTCCACAAGTTTTCTGGCTTCTGTTTACTAAGGAAGAGTCAAAAGCAGAAGAAGGTAGTTAAGAAGCTTCCAGCTGCTCAACAAAAGCGGATTCAACATTCTATGCACGGTCATTCAAAGGCTTCTGGGAGGTGGAGAAAAAAGTTGCTAGTTATTTTTCTGTTATTTGGAATCTTCAGTTCTGCAGGTTTATTTTGGTACATGAGTTCAGACATTGCGCAAAGAAGAGTAGAAATGCTTGCCACTATGTGCGATGAGCGAGCCCGAATGCTGCAAGATCAATTTAACGTGAGCATGAACCATGTCCATGCTCTCGCTATTCTTGTGTCTACATTTCACCATGGTAAACATCCTTCCGCAGTTGACCAGAATATTTTTGGAAAATATACAGAGAGTTCGGCATTTGAGAGACCACTTACAAGTGGTGTTGCTTATGCTTTGAAAGTTCTGCATTCTGATAGGGTGCATTTTGAAAAGCAGCACGGGTGGACAATTAAGAAAATGGAAGCCGAGAACGAGGCATTAGTTCAAGATTGTATTCCAGAAAACTTGGATCCGGCACCCTTTCAAGATGAATATGCACCAGTCATATTTGCTCAAGAAACAGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATCTTGCGAGCAAGGGCATCAGGAAAAGGTGTTCTGACGTCCCCTTTTAAACTACTAAAGTCCAATCACCTAGGTGTTGTACTTACATTTGCTGTCTATAACTCTGAACTTCCGCCTGATGCTACACCCGATCAGCGTATTGAAGCTACTGCGGGGTATCTTGGTGCATCTTATGATGTTCCATCGCTGGTGGACAAACTTCTTCACCAACTTGCCGGCAAGCAAACCATTGTTGTGAATGTTTATGACACAACTAATGCATCTGCACCTATTACAATGTATGGTACCGATGTTATTGATACCGGCTTACTACACATAAGTGGTCTAGATTTTGGGGATCCGCTGCGAAAACATGAGATGCACTGCAGGTTCAAACATAGGCCGCAATTACCTGGGACAGCAATCTTTGCATCTGCGGGGGTATTTGCTATTACCCTTCTTCTGGGATATATATTTCATGCAGCAATAAATCAAATAGCTAAAGTGGAGGATGACTATCGTCAAATGAGAGAGCTCTTAGTTCGTGCTGAAGTTGCCGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACCGACCTTGATGACAGTCAGATGGATTTTGCCCAAACTGCTCACACGAGTGGTAAAGATCTTATATCGGTCATAAACGAAGTTCTCTATCAAGCTAAGATTGAGGCAGGCAAACTTGAACTTGAAGCTGTAGCTTTTCATCCACAAGCTATTCTAGATGAAGTTCTATCACTTTTCTCTGAAAAGGCCAATGAAAAAGGAATTGAGTTGGCTGTTTATGCATCCAACCAAGTCCCTCAAGTTGTCATTGGCGATCCTAAACGCTTCAGGCAAATAATTGCCAATCTTGTTGGCAATTCACTTAAGTTCACTCACAATAAAGGACATGTTTTTGTCTCGATTCATCTGGCAAAAGAAGTGAAGAATCCACTTGATATCACGGATGCAGTGCTAAGAGAAGGCTTAATGAATCAGGACATATCAGAAAGAACATGTAATAATACATTGAGTGGATTTCCTGTAGGCAACAGATGGAAAAGCTGGGAAAATTTTAAAAAGTTAAATTTGATGAATGAGTCCGAAACTATTCAACTACTTGTAACTGTTGAGGACACTGGTATAGGAATTCCCACCGATGCACAAAGCCGCATATTCACACCTTTCATGCAAGCTGATAGTTCCACATCAAGAACATACGGTGGAACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGCGAGCCTAAAATCGGAAGTACTTTTTCATTCACTGGAAATTTCAGAAAAGGAGAAACCAAATCTCTGGATGAAAAGTTGCAACAGAAGTACAATCCTTTTGTCTCCGAGTTTCGAGGTTTGAAAGCATTAGTAATAGATAGAAGAAAAATCCGGGCCGAGGTTACAAGATATCACCTGCAAAGGTTAGGGCTGTCTGTGGATGTTAATTCCAGTCTTCAATCTGCATGCTTTTGTCTATCTGATACTTGCAACTCAAGTATGTCAAAGCAGTTGGCCATGATTCTTATAGACAAGGATTCCTGGGACAGTGAAAGTAGTATCGAATATGCAATCAAGAAACAAAGACAAAATGGCATCAAAGAGGACACATTAAACTTTCCAAAGATTTTTCTCCTGGCCACCCATCTTAGCCATAGTGAACGCACCGAGTTGAAATCGGCTGGTATCATAGATGATGTACTAATGAAGCCTCTTTGGCTAAGTGTTCTGATTCAGTACTACAGAGAGAAAGTATTCAAACTTGGAAATTTATTAATACAAAAACGGATTTTGGTGGTTGATGATAATGCAGTAAACCGAAAAGTTGCTGAAGGTGTTCTGAGGAAATACGGGGCAGTTGTTACATGTGTTGACGGGGGTAAGGCTGCTCTAAAGATGCTTAAACCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGTTTTGAGGTGACGAGGCGAATCCGTTATATGGAGAACGAGGTAAATGATAAAATCACTTGTGGGGAAGCATCGGCGGAGATGTTCGGGAATGTTTCTTATTGGCACATTCCAATACTAGCTATGACAGCTGATGTAACTCAAGCATCAAATGAAGAATGCAAAAAATGTGGGATGGATGACTACGTGTCAAAGCCATTTGAAGAAGATCAACTCTATATGGCAGTCGCACGTGTTTTCAATTTCGGTTCATAG 3633 0.3994 MSVNGRVSGSNGKLSSSKIKSWKGNESWHVSNSSTTCRWKLFLFWVFGVVVSIGSVWFIFSSFNIKNLSKESACEKSTQTLLQRYNVSRKQLHALASLFSGSDQILLNCIDERRLQMLLSSGIINTPPHSPCPKNQELQKEYRHVAEFIEQCPIFDDFVHTRLGLSFPWKTYVTLDSALLTNWLNVLFCGKVFLGPYWNYTVNLSSLVKGCCLVLIGIILFHKFSGFCLLRKSQKQKKVVKKLPAAQQKRIQHSMHGHSKASGRWRKKLLVIFLLFGIFSSAGLFWYMSSDIAQRRVEMLATMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAVDQNIFGKYTESSAFERPLTSGVAYALKVLHSDRVHFEKQHGWTIKKMEAENEALVQDCIPENLDPAPFQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNSELPPDATPDQRIEATAGYLGASYDVPSLVDKLLHQLAGKQTIVVNVYDTTNASAPITMYGTDVIDTGLLHISGLDFGDPLRKHEMHCRFKHRPQLPGTAIFASAGVFAITLLLGYIFHAAINQIAKVEDDYRQMRELLVRAEVADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDSQMDFAQTAHTSGKDLISVINEVLYQAKIEAGKLELEAVAFHPQAILDEVLSLFSEKANEKGIELAVYASNQVPQVVIGDPKRFRQIIANLVGNSLKFTHNKGHVFVSIHLAKEVKNPLDITDAVLREGLMNQDISERTCNNTLSGFPVGNRWKSWENFKKLNLMNESETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPKIGSTFSFTGNFRKGETKSLDEKLQQKYNPFVSEFRGLKALVIDRRKIRAEVTRYHLQRLGLSVDVNSSLQSACFCLSDTCNSSMSKQLAMILIDKDSWDSESSIEYAIKKQRQNGIKEDTLNFPKIFLLATHLSHSERTELKSAGIIDDVLMKPLWLSVLIQYYREKVFKLGNLLIQKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKMLKPPHNFDACFMDLQMPEMDGFEVTRRIRYMENEVNDKITCGEASAEMFGNVSYWHIPILAMTADVTQASNEECKKCGMDDYVSKPFEEDQLYMAVARVFNFGS 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05311 1210 Gene3D - 686 904 IPR036890 -
Trre9g05311 1210 Pfam His Kinase A (phospho-acceptor) domain 622 687 IPR003661 GO:0000155|GO:0007165
Trre9g05311 1210 CDD HisKA 622 683 IPR003661 GO:0000155|GO:0007165
Trre9g05311 1210 Gene3D - 66 102 - -
Trre9g05311 1210 Gene3D - 288 340 - -
Trre9g05311 1210 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 734 898 IPR003594 -
Trre9g05311 1210 SMART HKATPase_4 734 903 IPR003594 -
Trre9g05311 1210 CDD REC_hyHK_CKI1_RcsC-like 1070 1202 - -
Trre9g05311 1210 ProSiteProfiles Histidine kinase domain profile. 629 903 IPR005467 -
Trre9g05311 1210 PRINTS Bacterial sensor protein C-terminal signature 846 856 IPR004358 GO:0016310|GO:0016772
Trre9g05311 1210 PRINTS Bacterial sensor protein C-terminal signature 863 881 IPR004358 GO:0016310|GO:0016772
Trre9g05311 1210 PRINTS Bacterial sensor protein C-terminal signature 828 842 IPR004358 GO:0016310|GO:0016772
Trre9g05311 1210 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 676 898 IPR036890 -
Trre9g05311 1210 Gene3D - 591 685 - -
Trre9g05311 1210 ProSiteProfiles Response regulatory domain profile. 1069 1206 IPR001789 GO:0000160
Trre9g05311 1210 Pfam CHASE domain 340 534 IPR006189 -
Trre9g05311 1210 FunFam Histidine kinase 4 594 685 - -
Trre9g05311 1210 CDD HATPase_EvgS-ArcB-TorS-like 739 898 - -
Trre9g05311 1210 SUPERFAMILY CheY-like 1068 1207 IPR011006 -
Trre9g05311 1210 SMART CHASE_2 337 536 IPR006189 -
Trre9g05311 1210 SMART HisKA_10 622 687 IPR003661 GO:0000155|GO:0007165
Trre9g05311 1210 Gene3D - 1064 1208 - -
Trre9g05311 1210 Gene3D CHASE domain 341 568 IPR042240 -
Trre9g05311 1210 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 608 688 IPR036097 GO:0000155|GO:0007165
Trre9g05311 1210 SUPERFAMILY CheY-like 923 1054 IPR011006 -
Trre9g05311 1210 Pfam Response regulator receiver domain 1070 1202 IPR001789 GO:0000160
Trre9g05311 1210 PANTHER TWO-COMPONENT HISTIDINE KINASE 271 1199 - -
Trre9g05311 1210 FunFam Histidine kinase 4 341 568 - -
Trre9g05311 1210 SMART REC_2 1068 1202 IPR001789 GO:0000160
Trre9g05311 1210 ProSiteProfiles CHASE domain profile. 337 561 IPR006189 -
Trre9g05311 1210 Coils Coil 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05311 Trre-Chr9 58001691 58007783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05311 204 1206 Miscellaneous Gene Families AT5G35750 64.677 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g05311 CHASE 7.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05311 K14489 - gmx:100805107 1744.94