Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05308 ATGCTGCCTCCACGACAACAGTCCCGGGTTGGAGGTCTCCAAACATCACTGTCTCTGGTTTCTTCGGATCCTCGCTTGTCTCCAGAGGATCCTAGGTCAAACTCTGATAACCTCCGGGAATCTCCTACTGAAAGTGCTAGCTCTAGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCGAAGAAGATGGAGAATGGAAAAGCTGATATTGATTGTCCAGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCCGATAGAATTAGTCTTCAGGATATTGCTAGAGAAAGAGTGGATGTGATATGTGACAAAATGCATCGTCTACCTGAAGAGTTTCTAGATGAGCTGAAAAATGGGCTTCGAGTTATACTTGAGGGAGGAAATGGTTCACAGCATAGAGACGAGTTTTTCATTTTGCAGAAGCATGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATTCGAGCACATCGAACACAGCTTGAAATCCTTGTTTCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAGTCTGTCGCAGACAACGCTGATTGAGGTATTTCTGTACAAGAGATGCAGAAACATAGCTTGCCGAAACCTGCTTCCAGCTGATGATTGTTCTTGTGAAACCTGCACTAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACTTGCCGTTGGATTGGATGCGATTTGTGTTCTCACTGGACTCACACAGATTGTGCCATTCGGGAGCAACTTATCTGCATGGGTCCTTCTGTAAAGAGTGGATCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGCTGGGTTAAAGATGTCTTCCAGCACTGTGCACCATCATGGGATGGGGAGGCCTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCAACGGGGGATGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTAGAAAAATGGAAGCTAAAGCAGCATGCAGAGCAATATTGTTGGTTTTCCAAGAGCTTGACCTGGATTCCCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATACGAAAGATGGAATTTGTAGCTGATGAGAAGAAGAGAATGCACAAGAAGGCTCGCTTAGCTGTTGAGGCTTGTGATCGTGAATTAGCAGACAAAGCCAGAGAAGCAGGAGAACTCAAGATGGAGAGGCAAAAGAAGAAGTCACAGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGTTGAAGGCTAATGAGGCCAAACGAGAGGCTGAAAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCGGAGGAAGAATATACCAGCAACTATTTGAAACAGAAGTTAAGTGAGGCTGAGGCCGAGAAGCAATATCTCTATGAGAAAATCAAATTGCAGGAGAGTTCTCGTTTATCACAGAGTAGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTATACAATGGCCCTCCCAAGGCAGACAGTCAATCTAATGACTGCCACCCTTTCCGCACAAACCCATGA 1698 0.4423 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEDPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKADIDCPDQSVIRRVSSADRISLQDIARERVDVICDKMHRLPEEFLDELKNGLRVILEGGNGSQHRDEFFILQKHVQSRSDLTAKTLIRAHRTQLEILVSINTGIQGFLHPSISLSQTTLIEVFLYKRCRNIACRNLLPADDCSCETCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDQRGMKLFWKCDDLKEKLKSRKMEAKAACRAILLVFQELDLDSPKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKKRMHKKARLAVEACDRELADKAREAGELKMERQKKKSQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRLSQSSGDPSSMLMYSKIHDLLYNGPPKADSQSNDCHPFRTNP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05308 565 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Trre9g05308 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Trre9g05308 565 MobiDBLite consensus disorder prediction 1 52 - -
Trre9g05308 565 MobiDBLite consensus disorder prediction 545 565 - -
Trre9g05308 565 MobiDBLite consensus disorder prediction 38 52 - -
Trre9g05308 565 Pfam Coiled-coil region of Oberon 413 544 IPR032535 -
Trre9g05308 565 PIRSF UCP025218 1 550 - -
Trre9g05308 565 SMART PHD_3 225 285 IPR001965 -
Trre9g05308 565 Coils Coil 433 488 - -
Trre9g05308 565 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g05308 565 MobiDBLite consensus disorder prediction 549 565 - -
Trre9g05308 565 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 546 IPR004082 -
Trre9g05308 565 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05308 Trre-Chr9 57987132 57989243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05308 195 297 PHD Gene Family AT5G57380 32.692 2.32e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05308 - - gmx:100795450 1041.18