Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05305 ATGCCGCAAGCATCAAACGGTTATCAACTTGCATCTCAGCTCGGTCATTCAATCGTAGAGCCAATGCCGAGATTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTAACACTTGCTATTGTTCCTTTGATTGGTATTGCTGGAGGTCTTTATGCATATGTGACATTTGGGCTTATTGCAAAAGTTCGTAAATCATATCTAAGGGCAGGTGAAATCGCCCAGGAGGTGATAGGAAATGTCCGAACCGTTCAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTCGCTTTAAGGAACACATATAAGAATGGTCGAAAAGTAGGTTTAGCGAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTTACAAGTATTATTGTTCACATGGGCATCGCCAATGGTGGAGTCGCTTTCACTACCATGCTCATTGTCATTATCTCTGGCCTCTAA 495 0.4263 MPQASNGYQLASQLGHSIVEPMPRFIIGFFRVWQISIVTLAIVPLIGIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKVGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHMGIANGGVAFTTMLIVIISGL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05305 164 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 25 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05305 164 PANTHER ABC TRANSPORTER B FAMILY 17 163 IPR039421 -
Trre9g05305 164 Pfam ABC transporter transmembrane region 14 161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05305 164 Gene3D ABC transporter type 1, transmembrane domain 9 164 IPR036640 GO:0005524|GO:0016020
Trre9g05305 164 SUPERFAMILY ABC transporter transmembrane region 11 160 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05305 Trre-Chr9 57944905 57946203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05305 25 164 Calmodulin-binding Proteins AT2G36910 44.286 4.28e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05305 K05658 - gmx:100809752 238.81