Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05302 ATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGGTTTGAGACAAGGAAATGAGTTCATCAGGAAAGCTGGTAACTTTGGTTCAAGTCGCTTCACCATGCGTCGTACTGTGAAGAGTGCTCCTGAAAGCATTTGGTATGGCCCTGACAGACCCAAGTACTTGGGTCCATTCTCAGAACAAATTCCATCATACCTGACTGGTGAATTTCCTGGTGACTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACTTTTGCAAAGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGAGCATTGGGATGTACCTTCCCTGAAATCCTTGAAAAGAACGGTGTTAAATTCGGCGAAGCAGTCTGGTTTAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTGGGCAACCCAAACTTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTTGTTGAAGGTTACAGAATCGGTGGAGGACCTCTTGGTGAAGGACTAGACCCACTTTACCCTGGTGGTGCTTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAACTCAAGAACGGACGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACCGGCAAGGGACCTGTTCAGAACCTTTATGACCATCTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATAA 798 0.4762 MATSAIQQSAFTGKTGLRQGNEFIRKAGNFGSSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANNAWAYATNFVPGQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05302 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Trre9g05302 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Trre9g05302 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 264 IPR001344 GO:0009765|GO:0016020
Trre9g05302 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Trre9g05302 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05302 Trre-Chr9 57924716 57925962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05302 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 86.792 6.20e-177 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05302 K08913 - gmx:100815789 509.99