Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05301 ATGTCCTCAGAATCAGAAAATGCCAACATAGAACTTGGTGCTAGCTTACTTATTACTACTACTAGCAGTAGCAGTAGCAAGTACAGCAAGAAATGGCGTAAAAGCTTATACATAGGATTCCTCATCTCCTTGAAGAAGCCTACAACTTCTAGTGACCCCTATGAAGAATCTACATCACCATTTTCTTCGGCACCATACACTTCATTGCCTCCGGCAAGAAGCTCCTCTGCCAAATCTTTTGTTTCGATTGATATAGTCTCTCATGTCCAAGAGGAGGATGGAGAAGAAGAAGGGGACGGTGTAGTAGAACAACCGGTTAGGGATGATATTGCTAGAATTGTGAAGGAGAAGGACTTGAAATCTCTTCTTGAGCTTGGTGGGGTTGGCAGAGTTTGTCATGTTCTTCAAGCTCAAAGTCAACACTCGTTAGAGAAGATCATTGGGAACTTTGGAACAAGCTTCTCTAGCATTCTATGGAATAGCTGCAAGAACAATCTTTACACCATTTCATTGATGCTGATTTCGGCCTCATTGTCTTTTGCCATGGAGCTCAAGCAGGAGGGACCTAGATATGGTTGGCATGATGGTGTTGCTATGGTTTTTGTTGTTCTACTTATGATTGCATTCTCTTCAATAACTAACTTTCGGCACGAACGAAAAATGGTGAAGTTGGCAAAGAGAAAATGCCAGGAGGTGAAGTTCCTTGTTAAAAGAGGTGAACATGATCGTGTTCTTCCCGTATACGATATTGTGGTCGGTGACATGCTTTGTTTGAGTCCCCATGATGAGGTTCCTGCTGATGGTTTGCTTGTGAGTGGCGACGTCCTTGTGCTGACTTGTGGAATGAAAAATGAAAAAATTGATTGTGTGGAAAACCCATTTCTTATAGCTGGTTCAAAGGTGATTGAGGGTCATGGACAAATGGTTGTTACATCAGTTGGAAACAAACTGAATGTGGCTGAGATGAAAGGCTCTATGAATTGTAATTTTGAAAAGAAAGGCCTTTTGCACAGTCTAATTGAGAAGCCAATTTCTAACCTTGACAAAGCCTCTCTTTTTATCTTTACACTGGTTGCACTTGTAGAGTTCATTCGCCTAATTTGTAAAAAAGATGGAGATGGTGGCGGCTTGCCGGATATTAAAGGGAATAGTGTTTCAGTTGGCCTATTGGTGCAACTCCTTGAGAACATTTTTTTGAGACCACGAGGAAAGATTTCTATTTTAGCAAGACTTTTTGTTGTTGTAATATTGTGTGTACAACATGGAGTGCCACTTATGGTTACTTTATCTCTCCATTACCAGAATGATAAAGTAGTGCTTGATCAAGATGTTGTTCTTAATGATTTGTCAGCTTGTACAACAATGGGGTTGGTAACTGTCATCTGCATCGATGTATCTGGCGGGATTATATCAAGACCAATGGAGGTTAGCGGAATCTGGATGGGGGAGGGGGAGGCAGATATGAGCAAGGTTGAGGAATCAGAAGCAGGTTTAGTTGTACTTGACAAGCTTAAACAAGGACTTGGTTTATCAGTCCTTGCACCAGGATTATCTCCTTCTCCTGTGTCCAATTCACTTGTTTCTTGGGCAGAAAAAACATGGGAAATGGACATTTTATCTTTCAGAGACAATTTTCACATTCTTAAGCATAGCAAACTGGATTCTAACCAAAAGGGGAGTGGAGTGTTGGCCAGAAAAGTTAGGGTCAATGAACAAGTTATGCACGTGCACTGGAGCGGGGATGCATCCACAATATTGGAAATGTGTTCACAATACTATGACAGTGAAGGAGCATGTCATTCCATAGAAAATCAGAGAATCAAATTTGGACAGGTGATTCAAGAGATGGAGGATAATGGCCTTAAGCCAATTGCATTTGCTTGTAAAGAAACACAAGTGCAAAAACTGGAGCAAGATGAATTGACCTTGTTACCACTGGTAGGTCTCAAATTCAAGTGTCAAGAATCAACAAAATTAGCTTTGCAAAATCTCAAGAAAAATGGAATAGAAATCAAATTGGTCTCGGAGGATGACATCAAGGTAGTGAAAGACATAGCTTGTGAACTGAGAATAAAAGTGCCGATAAACGGTCACCTTGAAGGAAAAGAACTTCAAGATTTGAATGACAAAGAAAGATTAGTTAAAGTGGACAAAGCCATTGCAATGGGAAGTTTCAGTCCTAAAGACAAGCATCTCATGGTAAGGTGTTTGCAAGACAAAGGTGATGTCGTTGCGTTCATTGACCAACAAAGGTTGATGACGAATCATACTTCAGAAGTTCTAAAGCTAGTTGATGTAGGGATAGTTCATAACTCTCTAGGCAGAAGAATTGATAGTAGAGAGAAATGTGGTATGTCCATCACATGTTTCAGTGCATTGGAACCAATTGTTAAGGCTGGCAGAAGTAAATATCACAATATTCAAAAGTTCATTCAAGTTCAGCTGACAGTTGGTATATCAGGGTTACTCATAACCTTGATTACAACAATATTCACAGGAAATTCTCCCCTAACAGCAATCCAATTGATTTGGGTGAACACGCTAATGTGTATTTTGGGTGGTCTAATGATGGTGATGGAATTAAGTAGAGAGGAAGAACTTGTCAAAAAACCATCTGATAGGAATCAACCAATTATAACCAAGAAAATATGGAAAAACGTAGTTTTTCAAGTTCTGTATCAGGCTTCTGCATGCATGATACTTGAATTTGGGGGACATGTAACTGCCAGTGAAAAGCAAGTAAGGAAAATCATGATCTTCAATACATTCTTTCTATGCCAGCTCTTCAATCTGCTAAATATCATGGATTTCTTGAAAGCAGACGTTTTCAAGATTGATGTTCGGAAGTACTGTTTCTTAGTGGCTTTAGGTGTTTGTGTTGTTATGCAGATTGTGGTAATTGAGTTTGCAAAAAGCCTAGCAGATTGCATGCGGCTGAATGCTGCTGGATGGGCTATCTGTGTCCTGGTCAGTGCTGTTTCATGGGTACTTGAGTGGACCTTGAAGAAGATTTTCAGTTTTTTTCAGCACCAATTATAG 3039 0.3995 MSSESENANIELGASLLITTTSSSSSKYSKKWRKSLYIGFLISLKKPTTSSDPYEESTSPFSSAPYTSLPPARSSSAKSFVSIDIVSHVQEEDGEEEGDGVVEQPVRDDIARIVKEKDLKSLLELGGVGRVCHVLQAQSQHSLEKIIGNFGTSFSSILWNSCKNNLYTISLMLISASLSFAMELKQEGPRYGWHDGVAMVFVVLLMIAFSSITNFRHERKMVKLAKRKCQEVKFLVKRGEHDRVLPVYDIVVGDMLCLSPHDEVPADGLLVSGDVLVLTCGMKNEKIDCVENPFLIAGSKVIEGHGQMVVTSVGNKLNVAEMKGSMNCNFEKKGLLHSLIEKPISNLDKASLFIFTLVALVEFIRLICKKDGDGGGLPDIKGNSVSVGLLVQLLENIFLRPRGKISILARLFVVVILCVQHGVPLMVTLSLHYQNDKVVLDQDVVLNDLSACTTMGLVTVICIDVSGGIISRPMEVSGIWMGEGEADMSKVEESEAGLVVLDKLKQGLGLSVLAPGLSPSPVSNSLVSWAEKTWEMDILSFRDNFHILKHSKLDSNQKGSGVLARKVRVNEQVMHVHWSGDASTILEMCSQYYDSEGACHSIENQRIKFGQVIQEMEDNGLKPIAFACKETQVQKLEQDELTLLPLVGLKFKCQESTKLALQNLKKNGIEIKLVSEDDIKVVKDIACELRIKVPINGHLEGKELQDLNDKERLVKVDKAIAMGSFSPKDKHLMVRCLQDKGDVVAFIDQQRLMTNHTSEVLKLVDVGIVHNSLGRRIDSREKCGMSITCFSALEPIVKAGRSKYHNIQKFIQVQLTVGISGLLITLITTIFTGNSPLTAIQLIWVNTLMCILGGLMMVMELSREEELVKKPSDRNQPIITKKIWKNVVFQVLYQASACMILEFGGHVTASEKQVRKIMIFNTFFLCQLFNLLNIMDFLKADVFKIDVRKYCFLVALGVCVVMQIVVIEFAKSLADCMRLNAAGWAICVLVSAVSWVLEWTLKKIFSFFQHQL 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05301 1012 Gene3D - 472 493 IPR023299 GO:0000166
Trre9g05301 1012 Gene3D - 509 645 IPR023299 GO:0000166
Trre9g05301 1012 PANTHER CATION TRANSPORTING ATPASE 107 1005 - -
Trre9g05301 1012 Gene3D - 787 1007 - -
Trre9g05301 1012 MobiDBLite consensus disorder prediction 46 69 - -
Trre9g05301 1012 SUPERFAMILY Calcium ATPase, transduction domain A 233 316 IPR008250 -
Trre9g05301 1012 Gene3D - 459 471 IPR023214 -
Trre9g05301 1012 Gene3D - 646 777 IPR023214 -
Trre9g05301 1012 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 1007 IPR023298 -
Trre9g05301 1012 Pfam E1-E2 ATPase 232 364 - -
Trre9g05301 1012 Gene3D - 160 458 - -
Trre9g05301 1012 SUPERFAMILY HAD-like 641 747 IPR036412 -
Trre9g05301 1012 Gene3D - 151 327 - -
Trre9g05301 1012 Pfam Cation transporting ATPase, C-terminus 835 1003 IPR006068 -
Trre9g05301 1012 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 520 648 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05301 Trre-Chr9 57903232 57906419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05301 71 1004 Primary Pumps ATPases AT3G63380 32.655 5.15e-137 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05301 K01537 - gmx:102661547 1013.06