Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05287 ATGTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTCCATCATCTTCACATCAACAACCATCAATAACTCCTTCAAATGTTGTTGATATACCTGGTCCAAGTAACACTAACAATAACAACAATGATGATGAATTTGAAGCCCCTTCTTCTTCATCTTCATCTTCAAGACAACGTGCTATGAATGAAGTATGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATTCTTCTCATTATCATGGTCGTCTTTCTGCTGCTTCTGCTCTTGCCATTATTTTTCAGGTTTGTTCTACATGGAGAGAAGTGTCGCGCTCGGATCTACTGTGGCAGAGGCTCACGAGACGCATCTGGCGCAGAACATATAGATTGAGAGACACGTGGCAACTTGAGTACATCTACTGGCATCGAACGGCCAGGAACTTCACAACAGGTAGACATGCTTTAGTGGTCCCACAATATGATCCAGGAGACCACCACCAAACCCTCATTTGCCGCTGCCTTACTCTCTGCGACACCCACCTCGCCTGCGGCTTTGTCGACGGCACCGTTCGACTATTCGATCTCAACACCGGCACACACATCACTACTTTTTGGTCCAATCACGGTCACCTATTCGGCCCATTCTCGCAATCTATTTCCGGAATCGTAATTGCAAACTCTAGTCTCGCGTTTGCAAGACTGGATGGTGATATTTACATGTCATTGATTAATGGGCCCGTACCCATACCCGGGCCCATTCCAGCACGAAGAGCAATAATCGGCGATGTAGTTAATAACGGAGTATTAGTAGAATTCGCGGGTTGTAACCGGTTTTGGGTTGGTTTATTCGCGGGCCATGCAGGTGGAGCTTTTCAAATATGGGACACGCAAACGGAACAACGCGTGTTCGTCGGCGGTGCATTAACCGATCCCGAAGCCGTTCAAGGATGGCATATGTTAACCGAATTAGTTGAACCGGTCGGTCGAATCCGAGTAACTGAAAGAGAATTTGTAGTAGCATGCACAACTTCAAGATTGGTTTGTTTCAGCTTAAGAAATCCAGAGATTCTATTACGTGACATGGGATCCACAACCGGTTTCATGGTTAGTTCATTAGACATTAGCCATGAAGTTTTTGTTGTGGTTGAAAGAAATGGTGTTGGAACGGTTAGGCGCGTGGGAAATTTTGAGCGCGTGACTAGGTTTCGGTTAAGAGGTTCATGGTTAAGGGGTTTATTAGGGTGCATGAATTTAGGGTATGTTATAACATATTCAAGTGTGTCTGGTTTGTTGAGAGTGTGGGACATTCATGAACCTACGGCAAGGTTGTGTATTACAATTGCGGTTAGAGATGATGGTGGAGAGGGACAAGGACAAGTTCATGGTAATAGTATGGTTGCTAATCAAACTCATGTTGCTATTTCATCTAATGATTCTTCCATACATTTATTGGATTTTAGTGTACAGTAG 1464 0.4419 MSSSSSSSSSSSSPSSSHQQPSITPSNVVDIPGPSNTNNNNNDDEFEAPSSSSSSSRQRAMNEVWLEPVVEALATQVAIDSSHYHGRLSAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQTLICRCLTLCDTHLACGFVDGTVRLFDLNTGTHITTFWSNHGHLFGPFSQSISGIVIANSSLAFARLDGDIYMSLINGPVPIPGPIPARRAIIGDVVNNGVLVEFAGCNRFWVGLFAGHAGGAFQIWDTQTEQRVFVGGALTDPEAVQGWHMLTELVEPVGRIRVTEREFVVACTTSRLVCFSLRNPEILLRDMGSTTGFMVSSLDISHEVFVVVERNGVGTVRRVGNFERVTRFRLRGSWLRGLLGCMNLGYVITYSSVSGLLRVWDIHEPTARLCITIAVRDDGGEGQGQVHGNSMVANQTHVAISSNDSSIHLLDFSVQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05287 487 MobiDBLite consensus disorder prediction 1 58 - -
Trre9g05287 487 SUPERFAMILY WD40 repeat-like 163 483 IPR036322 GO:0005515
Trre9g05287 487 PANTHER WD40 REPEAT PROTEIN 12, 37 34 441 - -
Trre9g05287 487 Gene3D - 130 261 IPR015943 GO:0005515
Trre9g05287 487 Gene3D - 273 487 IPR015943 GO:0005515
Trre9g05287 487 SUPERFAMILY F-box domain 87 141 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05287 Trre-Chr9 57774073 57780641 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Trre9g05287 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05287 - - gmx:100807240 595.89