Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05262 ATGACATACAATTCAGATCAGAAAGTGGAAACCGTTGGTTATCTTGCCCAATGGAGATCACTCAGATTCTACAGCTACAAATATAATTCTGAACCTTTCAAGATAGCAAACTGGAATTGGCACATGTTACTCTTGAGGGTGAAAAATACAACAGATATAAGTACAACCATCAAATTATATCCAGCAAGGTCCATAGATTTTAACTCTCCTATTGCATCTTTCAAAATCCGTGTTCTTGAATCTGTTGGAAAACATGGAAAAGTCCTCGCAAAATCTGAATCGAAAGACAAGCTCATTACTATCGATGATGCTTTTACTTGGACGTTTGATGTTTCCTTGGCTGATTATGATACAAGATCCTTCTGTGTTGAACTTGAGTTCCTAGATCTCAAGACTTCAAATCCAAATAATAAGCGGAAAAGATCAACAACAACCCTTGATCGAATGTTAACAGAAAGTATCCACACAGACACTACAATCAATCTCGTTTCATCAGAGAAAAGCATAAGAGTTCATCGAGATGTTCTTGCGACTCGGTCACCGGTTTTTGATAGTATGTTTACACATGATTTTAAGGAGAATAATACAAGTGTTATAAACATCTCAGACATGTCAATTGAAGTTTGTCAAGCATTTATAAATTATCTATATGACAACATCGAAGATGAAGAACTTGAGATTTATAGTTTGGACTTATTGGCTGCTGCTGAGAAATATGGTGTTAATGACTTGAAAAAGGAATGTGAAAAGTGTCTTCAAGAAGATATCAACATAAAAAATATACTTGTGAAGTTGCAAACAGCATATTTCTATCGATTGCCAAACTTGAAGATTAGTTGTACTCGATATTTAGTGCAATTTGGTAAAATACATGAAATATGGGATGACTTCGATGCCTTTATAAAAACTTTGGATAAGGATACAATTTGTGAATTATTTCATGAAGTTATTCTTTAA 957 0.3396 MTYNSDQKVETVGYLAQWRSLRFYSYKYNSEPFKIANWNWHMLLLRVKNTTDISTTIKLYPARSIDFNSPIASFKIRVLESVGKHGKVLAKSESKDKLITIDDAFTWTFDVSLADYDTRSFCVELEFLDLKTSNPNNKRKRSTTTLDRMLTESIHTDTTINLVSSEKSIRVHRDVLATRSPVFDSMFTHDFKENNTSVINISDMSIEVCQAFINYLYDNIEDEELEIYSLDLLAAAEKYGVNDLKKECEKCLQEDINIKNILVKLQTAYFYRLPNLKISCTRYLVQFGKIHEIWDDFDAFIKTLDKDTICELFHEVIL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05262 318 Pfam BTB/POZ domain 150 254 IPR000210 GO:0005515
Trre9g05262 318 Gene3D Potassium Channel Kv1.1; Chain A 129 286 IPR011333 -
Trre9g05262 318 CDD BTB_POZ_ZBTB_KLHL-like 155 239 - -
Trre9g05262 318 PANTHER OS08G0495500 PROTEIN-RELATED 5 317 IPR044714 -
Trre9g05262 318 SMART BTB_4 158 256 IPR000210 GO:0005515
Trre9g05262 318 SUPERFAMILY POZ domain 139 254 IPR011333 -
Trre9g05262 318 ProSiteProfiles BTB domain profile. 156 219 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05262 Trre-Chr9 57596762 57600906 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre9g05262 BTB 2.7e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05262 K10523 - vvi:100243007 283.878